Factsheet for TraesCS4B01G325100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G497400.1	Wheat	cytosol	100.0	100.0
TraesCS4D01G322000.1	Wheat	cytosol	100.0	100.0
HORVU4Hr1G082240.6	Barley	cytosol	98.94	97.57
HORVU2Hr1G012690.1	Barley	cytosol	82.39	97.5
Os08t0398400-01	Rice	plasma membrane	90.14	90.14
Zm00001d050265_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	90.85	86.87
TraesCS5B01G188800.1	Wheat	cytosol, golgi, unclear	85.21	85.21
PGSC0003DMT400005236	Potato	cytosol	84.86	84.27
AT1G69840.3	Thale cress	cytosol	84.15	83.57
GSMUA_Achr6P35920_001	Banana	cytosol	83.8	83.51
KRH69355	Soybean	cytosol	83.8	83.22
KRG99161	Soybean	cytosol	82.39	81.82
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	79.93	79.09
KRH74781	Soybean	cytosol	79.58	79.02
TraesCS5B01G211700.1	Wheat	cytosol	79.23	78.4
KRH69356	Soybean	cytosol	78.87	78.05
KRH69350	Soybean	cytosol	79.23	77.85
TraesCS1B01G164200.1	Wheat	cytosol, extracellular	77.46	75.09
PGSC0003DMT400002232	Potato	cytosol	69.72	72.79
KRH45847	Soybean	cytosol	17.25	68.06
Solyc03g058940.2.1	Tomato	cytosol	19.37	66.27
VIT_01s0026g01640.t01	Wine grape	extracellular	84.86	64.61
KXG25127	Sorghum	mitochondrion	91.2	62.71
KRH69353	Soybean	cytosol	20.77	42.45
Bra029004.1-P	Field mustard	cytosol	20.77	41.26
CDY64099	Canola	cytosol, nucleus	24.65	30.84

Protein Annotations

EnsemblPlants:TraesCS4B01G325100.1	EnsemblPlantsGene:TraesCS4B01G325100	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil
PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd03407
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:615830683..615833810

Molecular Weight (calculated)

31312.6 Da

IEP (calculated)

5.074

GRAVY (calculated)

-0.150

Length

284 amino acids

Sequence
(BLAST)

001: MGGVLGLIQI DQSTVAIKET FGKFDAILQP GCHCLPWCLG QQIAGYLSLR VQQLDVRCET KTKDNVFVNV VASVQYRALA DKASDAFYRL SNTREQIQSY
101: VFDVIRASVP KMNLDDVFEQ KNEIARAVED ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAATEKAEA EKILQIKRAE GEAESKYLAG
201: VGIARQRQAI VDGLRDSVLA FSENVPGTSS KDVMDMVLVT QYFDTMKDIG ASSKSSAVFI PHGPGAVKDI ASQIRDGQLQ GRMV

Best Arabidopsis Sequence Match ( AT1G69840.3 )
(BLAST)

001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE

Arabidopsis Description

HIR2Hypersensitive-induced response protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.