Factsheet for PGSC0003DMT400005236

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0398400-01	Rice	plasma membrane	86.71	87.32
KRH18505	Soybean	endoplasmic reticulum	86.71	86.71
HORVU2Hr1G012690.1	Barley	cytosol	72.38	86.25
KRG93497	Soybean	cytosol	86.01	86.01
PGSC0003DMT400065192	Potato	cytosol	85.66	85.96
PGSC0003DMT400083045	Potato	cytosol	85.66	85.96
EER96630	Sorghum	cytosol	84.97	85.56
Bra016261.1-P	Field mustard	cytosol	85.31	85.31
CDY11650	Canola	cytosol	85.31	85.31
CDY38764	Canola	cytosol	85.31	85.31
AT1G69840.3	Thale cress	cytosol	84.97	84.97
TraesCS4B01G325100.1	Wheat	golgi	84.27	84.86
TraesCS4D01G322000.1	Wheat	cytosol	84.27	84.86
TraesCS5A01G497400.1	Wheat	cytosol	84.27	84.86
Zm00001d005648_P002	Maize	cytosol, mitochondrion, plasma membrane	84.27	84.86
HORVU4Hr1G082240.6	Barley	cytosol	85.31	84.72
Bra007885.1-P	Field mustard	cytosol	84.27	84.56
CDY56083	Canola	cytosol	84.27	84.56
Os09t0361200-01	Rice	plasma membrane	84.62	84.32
CDY64507	Canola	cytosol	83.92	84.21
TraesCS5A01G193500.1	Wheat	cytosol	82.52	83.1
TraesCS5B01G188800.1	Wheat	cytosol, golgi, unclear	82.52	83.1
TraesCS5D01G195900.1	Wheat	cytosol	82.52	83.1
HORVU5Hr1G056950.4	Barley	cytosol	82.52	82.81
GSMUA_Achr6P35920_001	Banana	cytosol	82.17	82.46
Zm00001d050265_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	85.31	82.15
PGSC0003DMT400017866	Potato	cytosol	82.52	81.38
PGSC0003DMT400002232	Potato	cytosol	71.33	75.0
VIT_01s0026g01640.t01	Wine grape	extracellular	84.97	65.15
KXG25127	Sorghum	mitochondrion	84.62	58.6
PGSC0003DMT400079622	Potato	cytosol	58.04	57.24
PGSC0003DMT400070532	Potato	cytosol	58.04	56.85
Bra029004.1-P	Field mustard	cytosol	20.28	40.56
CDY64099	Canola	cytosol, nucleus	24.48	30.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400005236	EnsemblPlantsGene:PGSC0003DMG400002061	EntrezGene:102602004	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	PGSC:PGSC0003DMG400002061	RefSeq:XP_006361833.1
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000295426B	UniProt:M0ZPM8	MapMan:35.1	:

Description

Protein PPLZ12 [Source:PGSC_GENE;Acc:PGSC0003DMG400002061]

Coordinates

chr3:+:31358591..31361594

Molecular Weight (calculated)

31331.5 Da

IEP (calculated)

5.079

GRAVY (calculated)

-0.130

Length

286 amino acids

Sequence
(BLAST)

001: MGQTLGCIQV DQSTVAVKEQ FGKFDQVLEP GCHCLPWCLG YQVAGSLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ENAADAFYKL SNTKGQIQSY
101: VFDVIRASVP RMGLDAAFEQ KNEIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDIHVKRA MNEINAAARL RVAANEKAEA EKILQIKKAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLA FSENVPGTSP RDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVKDV ASQIREGLLQ AESIQH

Best Arabidopsis Sequence Match ( AT1G69840.3 )
(BLAST)

001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE

Arabidopsis Description

HIR2Hypersensitive-induced response protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.