CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93497	Soybean	cytosol	97.9	97.9
PGSC0003DMT400005236	Potato	cytosol	86.71	86.71
KRG99161	Soybean	cytosol	83.57	83.57
KRH69355	Soybean	cytosol	83.22	83.22
KRH03423	Soybean	cytosol	81.12	81.69
KRH56959	Soybean	cytosol, extracellular	79.72	80.28
KRH74781	Soybean	cytosol	79.02	79.02
KRH69350	Soybean	cytosol	79.72	78.89
Solyc03g058930.2.1	Tomato	cytosol, nucleus	29.37	78.5
KRH69356	Soybean	cytosol	77.27	77.0
KRH45847	Soybean	cytosol	18.18	72.22
KRH09235	Soybean	cytosol	57.34	56.16
KRH38733	Soybean	endoplasmic reticulum	56.99	55.82
KRH69353	Soybean	cytosol	21.68	44.6

Protein Annotations

EMBL:ACUP02008084	EnsemblPlants:KRH18505	EnsemblPlantsGene:GLYMA_13G065000	EntrezGene:100306559	Gene3D:3.30.479.30	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF13	PFAM:PF01145	ProteinID:KRH18504.1
ProteinID:KRH18505	ProteinID:KRH18505.1	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI00023D0491
UniProt:I1LWI3	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:16442377..16446020

Molecular Weight (calculated)

31552.7 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.177

Length

286 amino acids

Sequence
(BLAST)

001: MGQALGCYQV DQSNVAIKEH FGKFDDVLEP GCHCLPWCLG YQIAGSLSLR VQQLDVRCET KTKDNVFVTV VASVQYRAVS EKASDAFYRL TNTREQIQSY
101: VFDVIRASVP KLELDSVFEQ KNDIAKAVEE ELEKAMSTYG FEIVQTLIVD IEPDVNVKRA MNEINAAARL RLAANEKAEA EKILQIKKAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLA FSENVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSSVFI PHGPGAVKDI AMQIRDGLLQ ATTSQN

Best Arabidopsis Sequence Match ( AT1G69840.3 )
(BLAST)

001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE

Arabidopsis Description

HIR2Hypersensitive-induced response protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.