CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	KRH14106	AT5G35750.1	18642946
AT5G62740.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56959	Soybean	cytosol, extracellular	96.13	96.13
Solyc03g113220.2.1	Tomato	nucleus	90.49	90.18
PGSC0003DMT400065192	Potato	cytosol	90.49	90.18
PGSC0003DMT400083045	Potato	cytosol	90.14	89.82
Bra029247.1-P	Field mustard	cytosol	89.79	88.85
Bra010119.1-P	Field mustard	cytosol	89.44	88.5
AT5G62740.1	Thale cress	cytosol	89.08	88.46
Solyc06g071050.2.1	Tomato	nucleus	89.44	87.89
KXG22672	Sorghum	cytosol	88.73	87.8
Os05t0591900-05	Rice	cytosol	88.73	87.5
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	87.32	87.02
Bra008363.1-P	Field mustard	cytosol	72.54	86.55
Bra010118.1-P	Field mustard	cytosol	86.97	86.06
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	84.51	83.62
TraesCS5A01G212000.1	Wheat	cytosol	84.51	83.62
TraesCS5A01G212100.1	Wheat	cytosol	83.8	82.93
TraesCS5B01G211700.1	Wheat	cytosol	83.45	82.58
TraesCS5D01G221800.1	Wheat	cytosol	83.45	82.58
KRH18505	Soybean	endoplasmic reticulum	81.69	81.12
KRG93497	Soybean	cytosol	81.69	81.12
KRH69355	Soybean	cytosol	81.34	80.77
HORVU5Hr1G062410.6	Barley	cytosol	84.51	79.21
KRG99161	Soybean	cytosol	79.23	78.67
KRH74781	Soybean	cytosol	78.17	77.62
KRH69350	Soybean	cytosol	78.52	77.16
KRH69356	Soybean	cytosol	77.82	77.0
TraesCS5D01G221900.1	Wheat	cytosol	84.51	75.24
Zm00001d039173_P002	Maize	plastid	88.03	73.31
KRH45847	Soybean	cytosol	15.49	61.11
KRH09235	Soybean	cytosol	59.15	57.53
KRH38733	Soybean	endoplasmic reticulum	58.8	57.19
KRH69353	Soybean	cytosol	19.72	40.29
VIT_12s0034g00930.t01	Wine grape	mitochondrion	29.58	40.0
VIT_05s0020g03390.t01	Wine grape	extracellular	6.69	13.19

Protein Annotations

EMBL:ACUP02010348	EMBL:BT098576	EnsemblPlants:KRH03423	EnsemblPlantsGene:GLYMA_17G097000	EntrezGene:100804982	Gene3D:3.30.479.30
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145
ProteinID:KRH03422.1	ProteinID:KRH03423	ProteinID:KRH03423.1	ProteinID:KRH03424.1	ProteinID:KRH03425.1	SMART:SM00244
SUPFAM:SSF117892	UniParc:UPI0001B16750	UniProt:C6TLI9	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr17:+:7647482..7651148

Molecular Weight (calculated)

31382.8 Da

IEP (calculated)

6.368

GRAVY (calculated)

-0.147

Length

284 amino acids

Sequence
(BLAST)

001: MGNLFCCVQV DQSTVAIREG FGRFEKVLQP GCHCMPWFLG KQLAGHLSLR LQQLDLRCET KTKDNVFVNV VASIQYRALA EKANDAFYKL SNTKTQIQAY
101: VFDVIRASVP KLNLDDAFEQ KNEIAKAVEE ELEKAMSAYG YEIVQTLIVD IDPDEHVKRA MNEINAAARL RMAANEKAEA EKILLIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLVT QYFDTMKEIG AASKSSAVFI PHGPGAVRDV AGQIREGLLQ ASHQ

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.