Factsheet for PGSC0003DMT400083045

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071050.2.1	Tomato	nucleus	96.84	95.5
PGSC0003DMT400065192	Potato	cytosol	92.28	92.28
AT5G62740.1	Thale cress	cytosol	91.23	90.91
Bra029247.1-P	Field mustard	cytosol	91.23	90.59
KRH03423	Soybean	cytosol	89.82	90.14
Bra010119.1-P	Field mustard	cytosol	90.53	89.9
KRH56959	Soybean	cytosol, extracellular	88.42	88.73
Bra008363.1-P	Field mustard	cytosol	73.68	88.24
Os05t0591900-05	Rice	cytosol	88.42	87.5
Bra010118.1-P	Field mustard	cytosol	88.07	87.46
PGSC0003DMT400017866	Potato	cytosol	88.42	86.9
KXG22672	Sorghum	cytosol	87.02	86.41
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	85.96	85.96
TraesCS5A01G212000.1	Wheat	cytosol	86.32	85.71
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	86.32	85.71
PGSC0003DMT400005236	Potato	cytosol	85.96	85.66
TraesCS5B01G211700.1	Wheat	cytosol	85.96	85.37
TraesCS5A01G212100.1	Wheat	cytosol	85.61	85.02
TraesCS5D01G221800.1	Wheat	cytosol	85.26	84.67
HORVU5Hr1G062410.6	Barley	cytosol	86.32	81.19
VIT_17s0000g05680.t01	Wine grape	extracellular	92.28	80.67
TraesCS5D01G221900.1	Wheat	cytosol	86.32	77.12
PGSC0003DMT400002232	Potato	cytosol	72.63	76.1
GSMUA_Achr6P35910_001	Banana	cytosol	86.67	74.4
Zm00001d039173_P002	Maize	plastid	86.67	72.43
PGSC0003DMT400070532	Potato	cytosol	58.95	57.53
PGSC0003DMT400079622	Potato	cytosol	57.89	56.9
VIT_12s0034g00930.t01	Wine grape	mitochondrion	29.12	39.52
VIT_05s0020g03390.t01	Wine grape	extracellular	6.67	13.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400083045	EnsemblPlantsGene:PGSC0003DMG400033035	EntrezGene:102590795	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	PGSC:PGSC0003DMG400033035	RefSeq:XP_006354797.1
RefSeq:XP_006354798.1	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000295941E	UniProt:M1D6E4	MapMan:35.1

Description

Hypersensitive-induced reaction protein [Source:PGSC_GENE;Acc:PGSC0003DMG400033035]

Coordinates

chr6:-:51906279..51909032

Molecular Weight (calculated)

31475.7 Da

IEP (calculated)

5.429

GRAVY (calculated)

-0.149

Length

285 amino acids

Sequence
(BLAST)

001: MGNLLCCVQV DQSTVAIKEQ FGKYQDVLQP GCHFLPWCFG FQLAGHLSLR LQQLDVRCET KTKDNVFVNV VASIQYRALA DKANDAFYKL SNTKGQIQAY
101: VFDVIRASVP KLNLDDVFEQ KNEIAKAVED ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RVAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTSA KDVMDMVLLT QYFDTMKEIG ASSKSSAVFL PHGPGAVRDV ASQIRDGLLQ ASVDH

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.