Factsheet for GSMUA_Achr7P23910_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22740_001
GSMUA_Achr4P17470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT5G62740.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT5G62740.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03423	Soybean	cytosol	87.02	87.32
Bra029247.1-P	Field mustard	cytosol	87.02	86.41
Bra010119.1-P	Field mustard	cytosol	86.67	86.06
AT5G62740.1	Thale cress	cytosol	86.32	86.01
PGSC0003DMT400083045	Potato	cytosol	85.96	85.96
KRH56959	Soybean	cytosol, extracellular	85.61	85.92
PGSC0003DMT400065192	Potato	cytosol	85.61	85.61
Solyc03g113220.2.1	Tomato	nucleus	84.91	84.91
Bra010118.1-P	Field mustard	cytosol	84.91	84.32
Solyc06g071050.2.1	Tomato	nucleus	85.26	84.08
Bra008363.1-P	Field mustard	cytosol	70.18	84.03
GSMUA_Achr6P35920_001	Banana	cytosol	80.35	80.35
GSMUA_Achr6P35910_001	Banana	cytosol	85.96	73.8
GSMUA_Achr1P16680_001	Banana	cytosol, extracellular	57.89	56.9
VIT_12s0034g00930.t01	Wine grape	mitochondrion	28.77	39.05
GSMUA_Achr8P26210_001	Banana	cytosol	37.19	38.97
VIT_05s0020g03390.t01	Wine grape	extracellular	6.67	13.19

Protein Annotations

EnsemblPlants:GSMUA_Achr7P23910_001	EnsemblPlants:GSMUA_Achr7T23910_001	EnsemblPlantsGene:GSMUA_Achr7G23910_001	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	SEG:seg	SMART:SM00244
SUPFAM:SSF117892	UniParc:UPI000294A23E	UniProt:M0TK77	MapMan:35.1	:	:

Description

Hypersensitive-induced response protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G23910_001]

Coordinates

chr7:-:25977944..25982536

Molecular Weight (calculated)

31298.6 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.129

Length

285 amino acids

Sequence
(BLAST)

001: MGQALCCVTV DQSSVAIKES FGKFEDVLLP GCHCMPWFLG KKVSGRLSLR LQQLDVKCET KTKDNVFVNV VASVQYHALA EKASDAFYKL SNTRSQIQAY
101: VFDVIRASVP KLNLDDAFEQ KNDIAKAVEN ELEKAMSAYG YEIVQTLIVD IEPDVHVKRA MNEINAAARL RVAANEKAEA EKIIQIKRAE GEAEAKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLIT QYFDTMKEIG AQSKSSAVFI PHGPGSVRDV ADQIRDGLLQ ASTHN

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.