Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028839_P001 | Maize | cytosol | 16.54 | 40.91 |
| GSMUA_Achr7P23910_001 | Banana | cytosol, plasma membrane | 38.97 | 37.19 |
| Zm00001d003131_P001 | Maize | cytosol | 16.54 | 35.16 |
| GSMUA_Achr6P35920_001 | Banana | cytosol | 34.19 | 32.63 |
| GSMUA_Achr6P35910_001 | Banana | cytosol | 38.24 | 31.33 |
| Os01t0588100-00 | Rice | cytosol | 28.68 | 24.84 |
| GSMUA_Achr1P16680_001 | Banana | cytosol, extracellular | 26.47 | 24.83 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P26210_001 | EnsemblPlants:GSMUA_Achr8T26210_001 | EnsemblPlantsGene:GSMUA_Achr8G26210_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | ncoils:Coil | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF42 | PFscan:PS50096 |
| UniParc:UPI000296D38C | UniProt:M0TTS4 | MapMan:35.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G26210_001]
Coordinates
chr8:-:29836872..29842325
Molecular Weight (calculated)
30442.1 Da
IEP (calculated)
8.400
GRAVY (calculated)
0.060
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQMLCCVQV EQSTVAIREH SMMLSFSQDA IVKLQFMKNQ STLDNFFANV VASRQYRALA SKASDAFYKL TDTKSHIMAY VFDELLCQRS IWICDAFEQK
101: NDIAKAVVEE LENVMSAYGY EIVQTTSVDI ELWPCQQLMQ EEPSKLGAIA LVTSHVSQAV IESTSSKETN NGIEEQAATK AQAAFHGYLA CRAFRALKGI
201: IRLQALIHGH LVRRQAVATL HAMEGIVKLQ AVAQGRSVRC TFTGLKVAKS SVKRRLWKVE ILMHCHFFIG LT
101: NDIAKAVVEE LENVMSAYGY EIVQTTSVDI ELWPCQQLMQ EEPSKLGAIA LVTSHVSQAV IESTSSKETN NGIEEQAATK AQAAFHGYLA CRAFRALKGI
201: IRLQALIHGH LVRRQAVATL HAMEGIVKLQ AVAQGRSVRC TFTGLKVAKS SVKRRLWKVE ILMHCHFFIG LT
001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
Arabidopsis Description
HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.