Factsheet for GSMUA_Achr6P35910_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22740_001
GSMUA_Achr4P17470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT5G62740.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT5G62740.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0591900-05	Rice	cytosol	75.9	87.5
PGSC0003DMT400083045	Potato	cytosol	74.4	86.67
KXG22672	Sorghum	cytosol	74.7	86.41
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	73.8	85.96
PGSC0003DMT400065192	Potato	cytosol	73.19	85.26
Bra029247.1-P	Field mustard	cytosol	73.49	85.02
Solyc03g113220.2.1	Tomato	nucleus	72.89	84.91
Solyc06g071050.2.1	Tomato	nucleus	73.8	84.78
Bra010119.1-P	Field mustard	cytosol	73.19	84.67
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	72.59	83.97
TraesCS5A01G212000.1	Wheat	cytosol	72.59	83.97
TraesCS5A01G212100.1	Wheat	cytosol	72.29	83.62
AT5G62740.1	Thale cress	cytosol	71.99	83.57
TraesCS5D01G221800.1	Wheat	cytosol	71.99	83.28
TraesCS5B01G211700.1	Wheat	cytosol	71.99	83.28
Bra008363.1-P	Field mustard	cytosol	59.64	83.19
Bra010118.1-P	Field mustard	cytosol	71.69	82.93
GSMUA_Achr6P35920_001	Banana	cytosol	69.28	80.7
HORVU5Hr1G062410.6	Barley	cytosol	72.59	79.54
TraesCS5D01G221900.1	Wheat	cytosol	72.59	75.55
Zm00001d039173_P002	Maize	plastid	75.3	73.31
GSMUA_Achr1P16680_001	Banana	cytosol, extracellular	47.29	54.14
GSMUA_Achr8P26210_001	Banana	cytosol	31.33	38.24

Protein Annotations

EnsemblPlants:GSMUA_Achr6P35910_001	EnsemblPlants:GSMUA_Achr6T35910_001	EnsemblPlantsGene:GSMUA_Achr6G35910_001	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	SMART:SM00244	SUPFAM:SSF117892
UniParc:UPI0002957931	UniProt:M0TD34	MapMan:35.1	:	:	:

Description

Hypersensitive-induced response protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35910_001]

Coordinates

chr6:+:34030066..34032867

Molecular Weight (calculated)

36983.7 Da

IEP (calculated)

7.910

GRAVY (calculated)

-0.177

Length

332 amino acids

Sequence
(BLAST)

001: MGQMLCCVQV EQSTVAIKES FGKYDDVLQP GCHCLPWVFG KRIAGRLSLR MKQLDVKCET KTKDNVFVNV VASIQYRALP DKANDAFYKL SNTQSQIQAY
101: VFDVIRASVP KLNLDDAFEQ KNEIARAVEE ELEKAMSAYG FEIVQTLIVD MEPDEHVKRA MNEINAAARL RVAANEKAEA EKIVQIKRAE GEAEAKYLSG
201: VGIARQRQAI VDGLRDSVLG FSVNVPGTTP KDVLDMVLIT QYFDTMKEIG ASSKSSSVFI PHGPGAVRDI AAQVRDGLLQ AAPLHEGFIP SAKQEEIKVF
301: SVPINFANLG VWHHRRAAVH LLEIKRWQIK RT

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.