Factsheet for Bra010118.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010119.1-P	Field mustard	cytosol	96.86	96.86
Bra029247.1-P	Field mustard	cytosol	95.12	95.12
Bra008363.1-P	Field mustard	cytosol	77.0	92.86
AT5G62740.1	Thale cress	cytosol	91.99	92.31
PGSC0003DMT400083045	Potato	cytosol	87.46	88.07
KXG22672	Sorghum	cytosol	87.46	87.46
PGSC0003DMT400065192	Potato	cytosol	86.41	87.02
KRH03423	Soybean	cytosol	86.06	86.97
Os05t0591900-05	Rice	cytosol	87.11	86.81
Solyc03g113220.2.1	Tomato	nucleus	85.71	86.32
TraesCS5A01G212000.1	Wheat	cytosol	85.02	85.02
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	85.02	85.02
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	84.32	84.91
KRH56959	Soybean	cytosol, extracellular	83.97	84.86
Solyc06g071050.2.1	Tomato	nucleus	85.37	84.78
TraesCS5B01G211700.1	Wheat	cytosol	84.67	84.67
TraesCS5A01G212100.1	Wheat	cytosol	84.32	84.32
TraesCS5D01G221800.1	Wheat	cytosol	83.97	83.97
Bra016261.1-P	Field mustard	cytosol	81.53	81.82
Bra007885.1-P	Field mustard	cytosol	80.84	81.4
HORVU5Hr1G062410.6	Barley	cytosol	84.67	80.2
Bra001009.1-P	Field mustard	cytosol	77.35	77.62
VIT_17s0000g05680.t01	Wine grape	extracellular	88.15	77.61
Bra039130.1-P	Field mustard	cytosol	77.0	77.27
TraesCS5D01G221900.1	Wheat	cytosol	85.02	76.49
Zm00001d039173_P002	Maize	plastid	86.76	73.02
GSMUA_Achr6P35910_001	Banana	cytosol	82.93	71.69
Bra029166.1-P	Field mustard	cytosol	58.54	57.53
Bra029004.1-P	Field mustard	cytosol	21.6	43.36
VIT_12s0034g00930.t01	Wine grape	mitochondrion	29.97	40.95
VIT_05s0020g03390.t01	Wine grape	extracellular	6.97	13.89

Protein Annotations

EnsemblPlants:Bra010118.1	EnsemblPlants:Bra010118.1-P	EnsemblPlantsGene:Bra010118	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	SMART:SM00244	SUPFAM:SSF117892
UniParc:UPI000253F757	UniProt:M4D0W9	MapMan:35.1	:	:	:

Description

AT5G62740 (E=2e-147) | band 7 family protein

Coordinates

chrA06:+:19532587..19533677

Molecular Weight (calculated)

31559.8 Da

IEP (calculated)

4.944

GRAVY (calculated)

-0.106

Length

287 amino acids

Sequence
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEEGPVS GCHFLPWCLG QRVAGYLSLG LQQLDVRCET KTKDNVFVNV VASFQYRALA NNANDAFYKL SNTRSQIQAY
101: VFDVIRASVP KMLLDDVFEQ KNEIAKAVEE ELEKAMSAYG FEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAEAKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ATQIRDGLLQ GSFADQS

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.