Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62740.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0034g00930.t01 | Wine grape | mitochondrion | 63.19 | 43.33 |
| PGSC0003DMT400065192 | Potato | cytosol | 13.89 | 7.02 |
| Bra010119.1-P | Field mustard | cytosol | 13.89 | 6.97 |
| Bra029247.1-P | Field mustard | cytosol | 13.89 | 6.97 |
| Bra010118.1-P | Field mustard | cytosol | 13.89 | 6.97 |
| KXG22672 | Sorghum | cytosol | 13.89 | 6.97 |
| VIT_16s0022g01690.t01 | Wine grape | cytosol | 13.89 | 6.92 |
| KRH03423 | Soybean | cytosol | 13.19 | 6.69 |
| PGSC0003DMT400083045 | Potato | cytosol | 13.19 | 6.67 |
| GSMUA_Achr7P23910_001 | Banana | cytosol, plasma membrane | 13.19 | 6.67 |
| AT5G62740.1 | Thale cress | cytosol | 13.19 | 6.64 |
| Os05t0591900-05 | Rice | cytosol | 13.19 | 6.6 |
| Solyc06g071050.2.1 | Tomato | nucleus | 13.19 | 6.57 |
| KRH56959 | Soybean | cytosol, extracellular | 12.5 | 6.34 |
| Solyc03g113220.2.1 | Tomato | nucleus | 12.5 | 6.32 |
| TraesCS5A01G212000.1 | Wheat | cytosol | 12.5 | 6.27 |
| TraesCS5B01G211900.1 | Wheat | cytosol, golgi, unclear | 12.5 | 6.27 |
| HORVU5Hr1G062410.6 | Barley | cytosol | 12.5 | 5.94 |
| TraesCS5A01G212100.1 | Wheat | cytosol | 11.81 | 5.92 |
| TraesCS5B01G211700.1 | Wheat | cytosol | 11.81 | 5.92 |
| TraesCS5D01G221800.1 | Wheat | cytosol | 11.81 | 5.92 |
| Zm00001d039173_P002 | Maize | plastid | 13.89 | 5.87 |
| VIT_17s0000g05680.t01 | Wine grape | extracellular | 13.19 | 5.83 |
| TraesCS5D01G221900.1 | Wheat | cytosol | 12.5 | 5.64 |
| Bra008363.1-P | Field mustard | cytosol | 9.03 | 5.46 |
| VIT_01s0026g01640.t01 | Wine grape | extracellular | 12.5 | 4.83 |
Protein Annotations
| ArrayExpress:VIT_05s0020g03390 | EMBL:FN595749 | EnsemblPlants:VIT_05s0020g03390.t01 | EnsemblPlantsGene:VIT_05s0020g03390 | PANTHER:PTHR36326 | PANTHER:PTHR36326:SF8 |
| ProteinID:CBI26246 | ProteinID:CBI26246.3 | SignalP:SignalP-noTM | UniParc:UPI0001BE2CFF | UniProt:D7T6X5 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5:-:5162320..5163551
Molecular Weight (calculated)
15757.9 Da
IEP (calculated)
6.535
GRAVY (calculated)
-0.344
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLVSLIWV CGLNPQVTTD ETAFKMPKAT KPTAVHVNSL NVVLPFYSSK LTKDPIGKPL QESLKRTRSG YAANSVGLHE TGSFRKPLME SMEPENKTMR
101: RFLSSEEDGD KWADLLPDSK GFEAALIAAV LGSAIEKGEK TDLE
101: RFLSSEEDGD KWADLLPDSK GFEAALIAAV LGSAIEKGEK TDLE
001: MNLGVKKMAV LYHYPCHDGV FAALAAHLYF SAKSIPSLFF PNTVYSPITI NQLPLQDISH LYLFDFTGPP GFVHQVSPKV DNVVILDHHK TAIDSLGDVS
101: LTCKNVTSVL DIERSGATIA FDYFTQKLVE ESRGSCKEMN DFKRMRRVFE YIEDADIWKW ELPESKAFNS GILDLKIEYD FNKNQSLFDQ LLSLDHESVI
201: NRGKQSLSKK HKLIHEVLEQ SYEIVLGGDE EFGRCLAVNA DEITELRSEL GNQLAEKSKN LSLRGVGAVV YRVPELGDEN KLKISLRSVA EEDTTPVSQR
301: FGGGGHKNAS SFLLNSMEFE QWKVK
101: LTCKNVTSVL DIERSGATIA FDYFTQKLVE ESRGSCKEMN DFKRMRRVFE YIEDADIWKW ELPESKAFNS GILDLKIEYD FNKNQSLFDQ LLSLDHESVI
201: NRGKQSLSKK HKLIHEVLEQ SYEIVLGGDE EFGRCLAVNA DEITELRSEL GNQLAEKSKN LSLRGVGAVV YRVPELGDEN KLKISLRSVA EEDTTPVSQR
301: FGGGGHKNAS SFLLNSMEFE QWKVK
Arabidopsis Description
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, /.../teral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in 75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37 (source: NCBI BLink). [Source:TAIR;Acc:AT1G53345]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.