Factsheet for VIT_16s0022g01690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070532	Potato	cytosol	86.85	85.96
KRH09235	Soybean	cytosol	86.85	85.96
KRH38733	Soybean	endoplasmic reticulum	86.51	85.62
Solyc03g007190.2.1	Tomato	cytosol, nucleus, plastid	84.78	84.48
PGSC0003DMT400079622	Potato	cytosol	84.78	84.48
GSMUA_Achr1P16680_001	Banana	cytosol, extracellular	84.43	84.14
AT5G51570.1	Thale cress	cytosol	84.08	83.22
Bra029166.1-P	Field mustard	cytosol	82.01	81.16
CDY38872	Canola	cytosol	81.66	80.82
CDY32626	Canola	cytosol	81.66	80.82
EER89146	Sorghum	extracellular	79.93	80.21
Zm00001d036073_P002	Maize	plasma membrane	79.58	79.86
Os06t0136000-01	Rice	plasma membrane	78.89	79.17
HORVU7Hr1G017190.1	Barley	vacuole	77.51	77.78
TraesCS4A01G372600.1	Wheat	golgi	77.51	77.78
TraesCS7A01G074700.1	Wheat	extracellular	77.51	77.78
TraesCS7D01G069900.1	Wheat	extracellular	77.51	77.78
VIT_17s0000g05680.t01	Wine grape	extracellular	55.71	49.39
VIT_01s0026g01640.t01	Wine grape	extracellular	57.44	44.5
Os06t0135000-01	Rice	extracellular	11.07	41.03
VIT_12s0034g00930.t01	Wine grape	mitochondrion	20.76	28.57
VIT_05s0020g03390.t01	Wine grape	extracellular	6.92	13.89

Protein Annotations

EntrezGene:100260043	wikigene:100260043	Gene3D:3.30.479.30	MapMan:35.1	EMBL:AM487388	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	ProteinID:CAN77749	ProteinID:CAN77749.1	ProteinID:CBI24522	ProteinID:CBI24522.3	UniProt:D7T232
EMBL:FN595506	EntrezGene:LOC100260043	wikigene:LOC100260043	PFAM:PF01145	PANTHER:PTHR43327	PANTHER:PTHR43327:SF11
SMART:SM00244	SUPFAM:SSF117892	TIGR:TC55263	TIGR:TC67799	UniParc:UPI00015CB9E8	ArrayExpress:VIT_16s0022g01690
EnsemblPlantsGene:VIT_16s0022g01690	EnsemblPlants:VIT_16s0022g01690.t01	unigene:Vvi.4871	RefSeq:XP_002266655	RefSeq:XP_002266655.1	RefSeq:XP_010662382.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:+:13779184..13785455

Molecular Weight (calculated)

32140.7 Da

IEP (calculated)

5.078

GRAVY (calculated)

-0.166

Length

289 amino acids

Sequence
(BLAST)

001: MGNLCCMACV DQASIGVVER WGRFDKLAQP GFHFFNPLAG ECLAGLLSTR ISSLDVRIET KTKDNVFVQM LCSIQYRVIK ENADDAFYEL QNPKEQIQAF
101: VFDVVRAHVP RMTLDELFEQ KGDVAQTVLE ELEKVMGAYG YNIEHILMVD IIPDASVRKA MNEINAAQRL QLANVYKGEA EKILQVKKAE AEAEAKYLGG
201: VGVAKQRQAI TDGLRENILN FSNKVDGTSA KEVMDLIMVT QYFDTIKDLG NSSKNTTVFI PHGPGHVRDI GSQIRNGMME ASSAQLNVE

Best Arabidopsis Sequence Match ( AT5G51570.1 )
(BLAST)

001: MGNTYCILGG CIEQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRIKSLDVKI ETKTKDNVFV QLVCSIQYRV VKASADDAFY ELQNPKEQIQ
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV

Arabidopsis Description

HIR4Hypersensitive-induced response protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.