Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 4
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
plasma membrane: 28056797 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P16680_001 | Banana | cytosol, extracellular | 84.72 | 84.14 |
| KRH09235 | Soybean | cytosol | 82.29 | 81.16 |
| KRH38733 | Soybean | endoplasmic reticulum | 81.6 | 80.48 |
| PGSC0003DMT400079622 | Potato | cytosol | 80.21 | 79.66 |
| PGSC0003DMT400070532 | Potato | cytosol | 80.56 | 79.45 |
| Solyc03g007190.2.1 | Tomato | cytosol, nucleus, plastid | 79.86 | 79.31 |
| VIT_16s0022g01690.t01 | Wine grape | cytosol | 79.17 | 78.89 |
| AT5G51570.1 | Thale cress | cytosol | 78.82 | 77.74 |
| Bra029166.1-P | Field mustard | cytosol | 77.08 | 76.03 |
| CDY32626 | Canola | cytosol | 77.08 | 76.03 |
| CDY38872 | Canola | cytosol | 76.74 | 75.68 |
| Os08t0398400-01 | Rice | plasma membrane | 59.38 | 60.21 |
| Os05t0591900-05 | Rice | cytosol | 58.68 | 58.68 |
| Os09t0361200-01 | Rice | plasma membrane | 57.99 | 58.19 |
| Os01t0588400-01 | Rice | plasma membrane | 52.78 | 48.87 |
| Os06t0135000-01 | Rice | extracellular | 13.19 | 48.72 |
| Os01t0588100-00 | Rice | cytosol | 40.97 | 37.58 |
Protein Annotations
| Gene3D:3.30.479.30 | MapMan:35.1 | EntrezGene:4340038 | EMBL:AK060303 | EMBL:AK102678 | ProteinID:BAD68458.1 |
| ProteinID:BAD68883.1 | ProteinID:BAF18637.1 | ProteinID:BAS96029.1 | InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf | ProteinID:EAZ35747.1 |
| EnsemblPlantsGene:Os06g0136000 | EnsemblPlants:Os06t0136000-01 | PFAM:PF01145 | PANTHER:PTHR43327 | PANTHER:PTHR43327:SF11 | UniProt:Q5VNU2 |
| SMART:SM00244 | SUPFAM:SSF117892 | SignalP:SignalP-noTM | UniParc:UPI0000457E8A | RefSeq:XP_015641011.1 | SEG:seg |
Description
Similar to Hypersensitive-induced reaction protein 4. (Os06t0136000-01);Similar to Hypersensitive-induced reaction protein 4. (Os06t0136000-02)
Coordinates
chr6:-:1909700..1913030
Molecular Weight (calculated)
32142.7 Da
IEP (calculated)
5.404
GRAVY (calculated)
-0.059
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSAFFLLCG CVDQASVAVV EKWGRFLRLA EPGLHFFNPF AGEFVAGTLS TRVQSLDVRV ETKTKDNVFV QLICTIQYRV VKEHADDAFY ELQNPQQQIQ
101: AYVFDVVRAI VPRMNLDDLF EQKNDVAKAV LQELEKVMGD YGYSIEHILM VDIIPDAAVR RAMNEINAAQ RLQLASVYKG EAEKILLVKK AEAEAEAKHL
201: SGVGIARQRQ AITDGLRENI LNFSHSVSGT SAKEVMDLIM VTQYFDTIKE LGDGSKNTTV FIPHGPGHVR DISEQIRNGM MEASCSNV
101: AYVFDVVRAI VPRMNLDDLF EQKNDVAKAV LQELEKVMGD YGYSIEHILM VDIIPDAAVR RAMNEINAAQ RLQLASVYKG EAEKILLVKK AEAEAEAKHL
201: SGVGIARQRQ AITDGLRENI LNFSHSVSGT SAKEVMDLIM VTQYFDTIKE LGDGSKNTTV FIPHGPGHVR DISEQIRNGM MEASCSNV
001: MGNTYCILGG CIEQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRIKSLDVKI ETKTKDNVFV QLVCSIQYRV VKASADDAFY ELQNPKEQIQ
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV
Arabidopsis Description
HIR4Hypersensitive-induced response protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.