Factsheet for Solyc03g007190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
golgi 2
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079622	Potato	cytosol	99.31	99.31
KRH09235	Soybean	cytosol	87.24	86.64
KRH38733	Soybean	endoplasmic reticulum	86.9	86.3
VIT_16s0022g01690.t01	Wine grape	cytosol	84.48	84.78
AT5G51570.1	Thale cress	cytosol	84.48	83.9
Bra029166.1-P	Field mustard	cytosol	83.45	82.88
CDY38872	Canola	cytosol	83.1	82.53
CDY32626	Canola	cytosol	83.1	82.53
GSMUA_Achr1P16680_001	Banana	cytosol, extracellular	81.72	81.72
Os06t0136000-01	Rice	plasma membrane	79.31	79.86
EER89146	Sorghum	extracellular	78.62	79.17
HORVU7Hr1G017190.1	Barley	vacuole	78.62	79.17
TraesCS7D01G069900.1	Wheat	extracellular	78.62	79.17
TraesCS7A01G074700.1	Wheat	extracellular	78.62	79.17
TraesCS4A01G372600.1	Wheat	golgi	78.62	79.17
Zm00001d036073_P002	Maize	plasma membrane	78.28	78.82
Solyc02g067470.2.1	Tomato	endoplasmic reticulum, nucleus	47.93	58.65
Solyc03g113220.2.1	Tomato	nucleus	55.86	56.84
Solyc06g071050.2.1	Tomato	nucleus	56.55	56.75
Solyc01g010770.2.1	Tomato	cytosol	48.97	52.21
Solyc03g058930.2.1	Tomato	cytosol, nucleus	18.97	51.4
Solyc03g058940.2.1	Tomato	cytosol	14.14	49.4
Os06t0135000-01	Rice	extracellular	11.03	41.03

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.1	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005794	GO:GO:0005886
GO:GO:0009506	GO:GO:0016020	UniProt:K4BEE2	PFAM:PF01145	PANTHER:PTHR43327	PANTHER:PTHR43327:SF11
SMART:SM00244	SUPFAM:SSF117892	EnsemblPlantsGene:Solyc03g007190.2	EnsemblPlants:Solyc03g007190.2.1	UniParc:UPI0002767F69	SEG:seg

Description

Hypersensitive-induced response protein 4 [Source:Projected from Arabidopsis thaliana (AT5G51570) UniProtKB/Swiss-Prot;Acc:Q9FHM7]

Coordinates

chr3:-:1764428..1769612

Molecular Weight (calculated)

32318.7 Da

IEP (calculated)

4.885

GRAVY (calculated)

-0.234

Length

290 amino acids

Sequence
(BLAST)

001: MGNVNCVFCG CIEQASVGVV EKWGRFDRLA EPGLNFWNPL AGECLTGTLS TRINSLDVKI ETKTKDNVFV QLLCSIQYRV IRQNADDAFY ELQNPTEQIQ
101: AYVFDVVRAH VPKMNLDELF EQKDEVAKAV LEELEKVMGA YGYNIEHILM VDIIPDASVR RAMNEINAAQ RMQLASVYKG EADKILQVKK AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSHKVEGT SAKEVMDLIM ITQYFDTIKD LGNSSKNTTV FIPHGPGHVR DIGDQIRNGL MEAASAKDAE

Best Arabidopsis Sequence Match ( AT5G51570.1 )
(BLAST)

001: MGNTYCILGG CIEQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRIKSLDVKI ETKTKDNVFV QLVCSIQYRV VKASADDAFY ELQNPKEQIQ
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV

Arabidopsis Description

HIR4Hypersensitive-induced response protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.