Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- cytosol 2
- mitochondrion 2
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002232 | Potato | cytosol | 94.85 | 94.85 |
| Solyc03g113220.2.1 | Tomato | nucleus | 73.9 | 70.53 |
| Solyc06g071050.2.1 | Tomato | nucleus | 73.9 | 69.55 |
| Solyc02g067470.2.1 | Tomato | endoplasmic reticulum, nucleus | 56.62 | 64.98 |
| Solyc03g058930.2.1 | Tomato | cytosol, nucleus | 20.59 | 52.34 |
| Solyc03g058940.2.1 | Tomato | cytosol | 15.07 | 49.4 |
| Solyc03g007190.2.1 | Tomato | cytosol, nucleus, plastid | 52.21 | 48.97 |
Protein Annotations
| EnsemblPlants:Solyc01g010770.2.1 | EnsemblPlantsGene:Solyc01g010770.2 | Gene3D:3.30.479.30 | InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf | PANTHER:PTHR43327 |
| PANTHER:PTHR43327:SF6 | PFAM:PF01145 | SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI0002761D01 | UniProt:K4ATS0 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:5825560..5828696
Molecular Weight (calculated)
30074.9 Da
IEP (calculated)
4.552
GRAVY (calculated)
-0.118
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQAFGCIQV DQSTIAIKEN FGKYDDVLGP GFHFMPWCLG SQLAGYLSLR VQQLDITCES KTKDNVFVTL VASIQYRALA DKAADAFYKL SNTKEQIQAY
101: VFDVIRATIP TLELDKVFEQ KTEIAKTVGE RLEKVMSLYG YEILQALIVD VEPDDQVKSS MNEINAASRL REAAFEKAEG EKILQIKQAE GEAESKYLAG
201: LGIARQRQAI VEGLKESVIG FSTSVPGAST KDVMDMILIT QYFDAMKEIS VSSNTSAVFI PHEPEDASSV QR
101: VFDVIRATIP TLELDKVFEQ KTEIAKTVGE RLEKVMSLYG YEILQALIVD VEPDDQVKSS MNEINAASRL REAAFEKAEG EKILQIKQAE GEAESKYLAG
201: LGIARQRQAI VEGLKESVIG FSTSVPGAST KDVMDMILIT QYFDAMKEIS VSSNTSAVFI PHEPEDASSV QR
001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
Arabidopsis Description
HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.