Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- mitochondrion 6
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
endoplasmic reticulum: 29145071 |
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU91678 | Sorghum | cytosol | 35.87 | 80.95 |
| PGSC0003DMT400017866 | Potato | cytosol | 94.94 | 77.59 |
| Solyc03g058930.2.1 | Tomato | cytosol, nucleus | 32.49 | 71.96 |
| Solyc06g071050.2.1 | Tomato | nucleus | 83.54 | 68.51 |
| Solyc03g113220.2.1 | Tomato | nucleus | 82.28 | 68.42 |
| Solyc03g058940.2.1 | Tomato | cytosol | 22.78 | 65.06 |
| TraesCS1B01G164200.1 | Wheat | cytosol, extracellular | 79.32 | 64.16 |
| TraesCS1A01G146000.1 | Wheat | cytosol, extracellular | 79.32 | 64.16 |
| AT3G01290.1 | Thale cress | cytosol | 76.79 | 63.86 |
| Bra039130.1-P | Field mustard | cytosol | 76.37 | 63.29 |
| CDY37535 | Canola | cytosol | 76.37 | 63.29 |
| CDY49041 | Canola | cytosol | 76.37 | 63.29 |
| Bra001009.1-P | Field mustard | cytosol | 75.95 | 62.94 |
| CDX91951 | Canola | cytosol | 75.95 | 62.94 |
| CDX74295 | Canola | cytosol | 75.95 | 62.94 |
| Solyc01g010770.2.1 | Tomato | cytosol | 64.98 | 56.62 |
| TraesCS1D01G144600.2 | Wheat | golgi | 79.32 | 56.29 |
| HORVU1Hr1G038810.3 | Barley | golgi | 78.9 | 55.99 |
| Solyc03g007190.2.1 | Tomato | cytosol, nucleus, plastid | 58.65 | 47.93 |
Protein Annotations
| EnsemblPlants:Solyc02g067470.2.1 | EnsemblPlantsGene:Solyc02g067470.2 | Gene3D:3.30.479.30 | InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf | ncoils:Coil |
| PANTHER:PTHR43327 | PANTHER:PTHR43327:SF6 | PFAM:PF01145 | SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI00027691D9 |
| UniProt:K4B779 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:37662007..37665501
Molecular Weight (calculated)
25819.8 Da
IEP (calculated)
5.148
GRAVY (calculated)
-0.122
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MYAVKPSQRG DNVFLTVVAS IQYRALADKA TDAFYKLSNT RSQIQAYVFD VIRASVPKLN LDDVFEQKNQ IAKAVEDELE KAMSAYGYEI VQTLIVDIEP
101: DEHVKRAMNE INAAARLRVA ANEKAEADKI VQIKRAEGDA EAKYLAGLGV ARQRQAIVDG LRDSVLGFSV NVPGTTAKDV VDMVLITQYF DTMKEIGASS
201: KSSAVFIPHG PGAVSDIAGQ IRQGLLQGSA VEQQNLL
101: DEHVKRAMNE INAAARLRVA ANEKAEADKI VQIKRAEGDA EAKYLAGLGV ARQRQAIVDG LRDSVLGFSV NVPGTTAKDV VDMVLITQYF DTMKEIGASS
201: KSSAVFIPHG PGAVSDIAGQ IRQGLLQGSA VEQQNLL
001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
Arabidopsis Description
HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.