Factsheet for TraesCS1D01G144600.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G146000.1	Wheat	cytosol, extracellular	87.43	99.66
TraesCS1B01G164200.1	Wheat	cytosol, extracellular	87.13	99.32
HORVU1Hr1G038810.3	Barley	golgi	97.9	97.9
OQU91678	Sorghum	cytosol	28.44	90.48
PGSC0003DMT400017866	Potato	cytosol	71.56	82.41
TraesCS5D01G221800.1	Wheat	cytosol	69.46	80.84
Bra001009.1-P	Field mustard	cytosol	68.26	79.72
CDY49041	Canola	cytosol	68.26	79.72
CDY37535	Canola	cytosol	68.26	79.72
CDX91951	Canola	cytosol	68.26	79.72
CDX74295	Canola	cytosol	68.26	79.72
Bra039130.1-P	Field mustard	cytosol	68.26	79.72
Solyc02g067470.2.1	Tomato	endoplasmic reticulum, nucleus	56.29	79.32
TraesCS5D01G195900.1	Wheat	cytosol	66.77	78.52
AT3G01290.1	Thale cress	cytosol	66.47	77.89
TraesCS4D01G322000.1	Wheat	cytosol	65.87	77.46
TraesCS5D01G221900.1	Wheat	cytosol	70.36	73.67
TraesCS7D01G069900.1	Wheat	extracellular	47.6	55.21

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.1	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil	GO:GO:0002239
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773
GO:GO:0005774	GO:GO:0005886	GO:GO:0008150	GO:GO:0009506	GO:GO:0009605	GO:GO:0009607
GO:GO:0016020	PFAM:PF01145	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	SMART:SM00244	SUPFAM:SSF117892
EnsemblPlantsGene:TraesCS1D01G144600	EnsemblPlants:TraesCS1D01G144600.2	TIGR:cd03407	:	:	:

Description

No Description!

Coordinates

chr1D:-:199842438..199843773

Molecular Weight (calculated)

37011.0 Da

IEP (calculated)

8.119

GRAVY (calculated)

-0.015

Length

334 amino acids

Sequence
(BLAST)

001: MGKLVAAIGK LLCCVQVDQS TVAIKERFGK FEDVLDPGCH CVPWIIGSRV SGKLTLRLRQ MDVRCETKTK VLLQFTSRII HSKHPHASQK LVEITLIYAI
101: YFLLTLCIIL QDNVFVTIVA SIQYRAMEDK ANDAYYKLSN PKSQIQSYVF DVIRASIPKL QLDDVFEQKN DIAKSVEQEL EKAMFAYGYE IVQTLIVDIE
201: PDEKVKKAMN EINAAARMRV AANEKAEAEK IVQIKRAEGE AEAKYLSGLG IARQRQAIVD GLRDSVLGFS GNVPGTSAKD VMDLVLLTQY FDTMKEIGAS
301: SKSSAVFLPH GPGAVADIAS QIRNGFLQAS THHA

Best Arabidopsis Sequence Match ( AT1G69840.3 )
(BLAST)

001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE

Arabidopsis Description

HIR2Hypersensitive-induced response protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.