CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067470.2.1	Tomato	endoplasmic reticulum, nucleus	80.95	35.87
TraesCS1B01G164200.1	Wheat	cytosol, extracellular	90.48	32.42
TraesCS1A01G146000.1	Wheat	cytosol, extracellular	90.48	32.42
PGSC0003DMT400017866	Potato	cytosol	82.86	30.0
Bra001009.1-P	Field mustard	cytosol	80.95	29.72
Bra039130.1-P	Field mustard	cytosol	80.95	29.72
CDX74295	Canola	cytosol	80.95	29.72
CDX91951	Canola	cytosol	80.95	29.72
CDY37535	Canola	cytosol	80.95	29.72
CDY49041	Canola	cytosol	80.95	29.72
KXG22672	Sorghum	cytosol	80.95	29.62
AT3G01290.1	Thale cress	cytosol	80.0	29.47
TraesCS1D01G144600.2	Wheat	golgi	90.48	28.44
HORVU1Hr1G038810.3	Barley	golgi	90.48	28.44
EER96630	Sorghum	cytosol	74.29	27.46
EER89146	Sorghum	extracellular	57.14	20.83
KXG25127	Sorghum	mitochondrion	79.05	20.1
EES03186	Sorghum	cytosol	56.19	20.0

Protein Annotations

MapMan:35.1	UniProt:A0A1Z5S6Y2	ncoils:Coil	GO:GO:0002239	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886
GO:GO:0008150	GO:GO:0009506	GO:GO:0009605	GO:GO:0009607	GO:GO:0016020	EnsemblPlants:OQU91678
ProteinID:OQU91678	ProteinID:OQU91678.1	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	EnsemblPlantsGene:SORBI_3001G227601	UniParc:UPI0001A825FB
RefSeq:XP_002464518.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:21805120..21807084

Molecular Weight (calculated)

11005.1 Da

IEP (calculated)

6.871

GRAVY (calculated)

-0.140

Length

105 amino acids

Sequence
(BLAST)

001: MEDKTTARLR VAANEKAEAE KIIQIKRAEG EAEAKYLSGL GIARRQAIVD GLRDSVLGFS GNVTGTSAKD VMDFGTMKEI GVASKSSAVF LPYGPGAVAD
101: IASQT

Best Arabidopsis Sequence Match ( AT3G01290.1 )
(BLAST)

001: MGNLFCCVLV KQSDVAVKER FGKFQKVLNP GLQFVPWVIG DYVAGTLTLR LQQLDVQCET KTKDNVFVTV VASIQYRVLA DKASDAFYRL SNPTTQIKAY
101: VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID IEPDQQVKRA MNEINAAARM RVAASEKAEA EKIIQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG ATSKSSAVFI PHGPGAVSDV AAQIRNGLLQ ANNAS

Arabidopsis Description

HIR3HIR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.