Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001009.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX91951 | Canola | cytosol | 100.0 | 100.0 |
| CDY37535 | Canola | cytosol | 98.95 | 98.95 |
| CDY49041 | Canola | cytosol | 98.95 | 98.95 |
| AT3G01290.1 | Thale cress | cytosol | 94.41 | 94.74 |
| OQU91678 | Sorghum | cytosol | 29.72 | 80.95 |
| PGSC0003DMT400017866 | Potato | cytosol | 80.07 | 78.97 |
| TraesCS1A01G146000.1 | Wheat | cytosol, extracellular | 80.07 | 78.16 |
| TraesCS1B01G164200.1 | Wheat | cytosol, extracellular | 79.72 | 77.82 |
| Solyc02g067470.2.1 | Tomato | endoplasmic reticulum, nucleus | 62.94 | 75.95 |
| CDY11650 | Canola | cytosol | 74.48 | 74.48 |
| CDY38764 | Canola | cytosol | 74.48 | 74.48 |
| CDY56083 | Canola | cytosol | 74.13 | 74.39 |
| CDY64507 | Canola | cytosol | 74.13 | 74.39 |
| HORVU1Hr1G038810.3 | Barley | golgi | 79.72 | 68.26 |
| TraesCS1D01G144600.2 | Wheat | golgi | 79.72 | 68.26 |
| CDY38872 | Canola | cytosol | 56.29 | 55.14 |
| CDY32626 | Canola | cytosol | 56.29 | 55.14 |
| CDY64099 | Canola | cytosol, nucleus | 24.13 | 30.4 |
Protein Annotations
| EnsemblPlants:CDX74295 | EnsemblPlantsGene:GSBRNA2T00112088001 | Gene3D:3.30.479.30 | GO:A0A078CBV7 | InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf |
| ncoils:Coil | PANTHER:PTHR43327 | PANTHER:PTHR43327:SF6 | PFAM:PF01145 | ProteinID:CDX74295 | ProteinID:CDX74295.1 |
| SEG:seg | SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI00025407EF | MapMan:35.1 | : |
Description
BnaA03g27520D
Coordinates
chrLK031800:-:2102571..2104010
Molecular Weight (calculated)
31612.1 Da
IEP (calculated)
6.151
GRAVY (calculated)
-0.103
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNLLCCVLV KQSDVAIKER FGKFEKVLNP GLQFVPWVIG DYVAGHLTLR LQQLDVQCET KTKDNVFVTV VASIQYRVLV DKASDAFYRL SNPTSQIKAY
101: VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID IEPDQQVKRA MNEINAAARM RVAANEKAEA EKIIQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG AHSKSSSVFI PHGPGAVADV ATQIRNGLLQ AHQTNA
101: VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID IEPDQQVKRA MNEINAAARM RVAANEKAEA EKIIQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG AHSKSSSVFI PHGPGAVADV ATQIRNGLLQ AHQTNA
001: MGNLFCCVLV KQSDVAVKER FGKFQKVLNP GLQFVPWVIG DYVAGTLTLR LQQLDVQCET KTKDNVFVTV VASIQYRVLA DKASDAFYRL SNPTTQIKAY
101: VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID IEPDQQVKRA MNEINAAARM RVAASEKAEA EKIIQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG ATSKSSAVFI PHGPGAVSDV AAQIRNGLLQ ANNAS
101: VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID IEPDQQVKRA MNEINAAARM RVAASEKAEA EKIIQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG ATSKSSAVFI PHGPGAVSDV AAQIRNGLLQ ANNAS
Arabidopsis Description
HIR3HIR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.