CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016261.1-P	Field mustard	cytosol	100.0	100.0
CDY11650	Canola	cytosol	100.0	100.0
CDY56083	Canola	cytosol	97.2	97.54
AT1G69840.3	Thale cress	cytosol	97.2	97.2
CDY64507	Canola	cytosol	96.85	97.19
PGSC0003DMT400005236	Potato	cytosol	85.31	85.31
KRH69355	Soybean	cytosol	85.31	85.31
KRG99161	Soybean	cytosol	84.97	84.97
KRH74781	Soybean	cytosol	80.77	80.77
KRH69350	Soybean	cytosol	80.77	79.93
KRH69356	Soybean	cytosol	78.67	78.4
PGSC0003DMT400002232	Potato	cytosol	71.68	75.37
CDY37535	Canola	cytosol	74.83	74.83
CDY49041	Canola	cytosol	74.83	74.83
CDX91951	Canola	cytosol	74.48	74.48
CDX74295	Canola	cytosol	74.48	74.48
KRH45847	Soybean	cytosol	18.53	73.61
VIT_01s0026g01640.t01	Wine grape	extracellular	87.41	67.02
CDY38872	Canola	cytosol	56.99	55.82
CDY32626	Canola	cytosol	56.64	55.48
KRH69353	Soybean	cytosol	22.73	46.76
CDY64099	Canola	cytosol, nucleus	23.43	29.52

Protein Annotations

EnsemblPlants:CDY38764	EnsemblPlantsGene:GSBRNA2T00066558001	Gene3D:3.30.479.30	GO:A0A078FB92	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF13	PFAM:PF01145	ProteinID:CDY11650.1	ProteinID:CDY38764
ProteinID:CDY38764.1	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000254190D	UniProt:A0A078FB92
MapMan:35.1	:	:	:	:	:

Description

BnaA07g28360DBnaA07g28360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB92]

Coordinates

chrLK032432:-:78446..80456

Molecular Weight (calculated)

31318.3 Da

IEP (calculated)

5.073

GRAVY (calculated)

-0.183

Length

286 amino acids

Sequence
(BLAST)

001: MGQVLGCVQV DQSTVAIKET FGKFDDVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVES ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVKDI ASQIRDGLLQ GNAAAE

Best Arabidopsis Sequence Match ( AT1G69840.3 )
(BLAST)

001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE

Arabidopsis Description

HIR2Hypersensitive-induced response protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.