Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g058940.2.1 | Tomato | cytosol | 22.91 | 62.65 |
| HORVU2Hr1G012690.1 | Barley | cytosol | 31.28 | 29.58 |
| Os08t0398400-01 | Rice | plasma membrane | 31.28 | 25.0 |
| HORVU4Hr1G082240.6 | Barley | cytosol | 31.28 | 24.65 |
| TraesCS5A01G497400.1 | Wheat | cytosol | 30.84 | 24.65 |
| TraesCS4D01G322000.1 | Wheat | cytosol | 30.84 | 24.65 |
| TraesCS4B01G325100.1 | Wheat | golgi | 30.84 | 24.65 |
| PGSC0003DMT400005236 | Potato | cytosol | 30.84 | 24.48 |
| CDX91951 | Canola | cytosol | 30.4 | 24.13 |
| CDY49041 | Canola | cytosol | 30.4 | 24.13 |
| CDY37535 | Canola | cytosol | 30.4 | 24.13 |
| CDX74295 | Canola | cytosol | 30.4 | 24.13 |
| Zm00001d050265_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 31.28 | 23.91 |
| CDY38764 | Canola | cytosol | 29.52 | 23.43 |
| CDY11650 | Canola | cytosol | 29.52 | 23.43 |
| CDY64507 | Canola | cytosol | 29.07 | 23.16 |
| GSMUA_Achr6P35920_001 | Banana | cytosol | 29.07 | 23.16 |
| CDY56083 | Canola | cytosol | 29.07 | 23.16 |
| PGSC0003DMT400002232 | Potato | cytosol | 23.79 | 19.85 |
| CDY38872 | Canola | cytosol | 24.23 | 18.84 |
| CDY32626 | Canola | cytosol | 23.79 | 18.49 |
| KXG25127 | Sorghum | mitochondrion | 31.28 | 17.19 |
Protein Annotations
| EnsemblPlants:CDY64099 | EnsemblPlantsGene:GSBRNA2T00040876001 | Gene3D:3.30.479.30 | GO:A0A078JCK5 | InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf |
| PANTHER:PTHR43327 | PANTHER:PTHR43327:SF13 | PFAM:PF01145 | ProteinID:CDY64099 | ProteinID:CDY64099.1 | SEG:seg |
| SUPFAM:SSF117892 | UniParc:UPI0004EE01AE | UniProt:A0A078JCK5 | MapMan:35.1 | : | : |
Description
BnaC09g53100DBnaC09g53100D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JCK5]
Coordinates
chrLK034400:+:2..1366
Molecular Weight (calculated)
25974.1 Da
IEP (calculated)
4.714
GRAVY (calculated)
-0.564
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: KLLLDDVFEQ KNEIAKAVEE ELEKEMSAYG FEIVQTLIVD IEPDEHGKRA MNEINAGNKT VKNLRDKLSI LYEQDRQVDN VISDIPRDGP RKPAKNTVRD
101: WTSIFRTTSR VGQARRVPPE DKPAAINWQG RLSLDSSPVS RLEMDDMSGR ILFPLSSVGG RVKLKGKLGL VISEYDSFWE PSIDMQIQEP IAYSIEMLSK
201: VEPSSLIREE EDMRELKENY LLPTLHM
101: WTSIFRTTSR VGQARRVPPE DKPAAINWQG RLSLDSSPVS RLEMDDMSGR ILFPLSSVGG RVKLKGKLGL VISEYDSFWE PSIDMQIQEP IAYSIEMLSK
201: VEPSSLIREE EDMRELKENY LLPTLHM
001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
Arabidopsis Description
HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.