CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029166.1-P	Field mustard	cytosol	98.63	98.63
CDY38872	Canola	cytosol	98.63	98.63
AT5G51570.1	Thale cress	cytosol	92.12	92.12
PGSC0003DMT400079622	Potato	cytosol	82.88	83.45
Solyc03g007190.2.1	Tomato	cytosol, nucleus, plastid	82.53	83.1
PGSC0003DMT400070532	Potato	cytosol	82.88	82.88
VIT_16s0022g01690.t01	Wine grape	cytosol	80.82	81.66
KRH09235	Soybean	cytosol	81.51	81.51
KRH38733	Soybean	endoplasmic reticulum	81.16	81.16
GSMUA_Achr1P16680_001	Banana	cytosol, extracellular	77.4	77.93
Os06t0136000-01	Rice	plasma membrane	76.03	77.08
Zm00001d036073_P002	Maize	plasma membrane	75.68	76.74
EER89146	Sorghum	extracellular	75.68	76.74
HORVU7Hr1G017190.1	Barley	vacuole	73.63	74.65
TraesCS4A01G372600.1	Wheat	golgi	73.63	74.65
TraesCS7A01G074700.1	Wheat	extracellular	73.63	74.65
TraesCS7D01G069900.1	Wheat	extracellular	73.63	74.65
CDY56083	Canola	cytosol	55.82	57.19
CDY64507	Canola	cytosol	55.48	56.84
CDY38764	Canola	cytosol	55.48	56.64
CDY11650	Canola	cytosol	55.48	56.64
CDY49041	Canola	cytosol	55.14	56.29
CDY37535	Canola	cytosol	55.14	56.29
CDX91951	Canola	cytosol	55.14	56.29
CDX74295	Canola	cytosol	55.14	56.29
Os06t0135000-01	Rice	extracellular	11.99	44.87
CDY64099	Canola	cytosol, nucleus	18.49	23.79

Protein Annotations

EnsemblPlants:CDY32626	EnsemblPlantsGene:GSBRNA2T00052657001	Gene3D:3.30.479.30	GO:A0A078H482	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
PANTHER:PTHR43327	PANTHER:PTHR43327:SF11	PFAM:PF01145	ProteinID:CDY32626	ProteinID:CDY32626.1	SMART:SM00244
SUPFAM:SSF117892	UniParc:UPI0004EB6DC9	UniProt:A0A078H482	MapMan:35.1	:	:

Description

BnaC03g15940DBnaC03g15940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H482]

Coordinates

chrLK032297:-:309443..311136

Molecular Weight (calculated)

32367.9 Da

IEP (calculated)

5.230

GRAVY (calculated)

-0.139

Length

292 amino acids

Sequence
(BLAST)

001: MGNTNCIIGG CIDQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRINSLEVKI ETKTKDNVFV QLICSIQYRV VKTNADDAFY ELQNPREQIQ
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI MNFSSKVEGT SSKDIMDLIM ITQYFDTMRD LGSSSKNTTV FLPHGPGHVR DISDQIRNGL MEASSARVSD GV

Best Arabidopsis Sequence Match ( AT5G51570.1 )
(BLAST)

001: MGNTYCILGG CIEQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRIKSLDVKI ETKTKDNVFV QLVCSIQYRV VKASADDAFY ELQNPKEQIQ
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV

Arabidopsis Description

HIR4Hypersensitive-induced response protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.