Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89146 | Sorghum | extracellular | 98.26 | 98.26 |
| TraesCS7D01G069900.1 | Wheat | extracellular | 90.62 | 90.62 |
| HORVU7Hr1G017190.1 | Barley | vacuole | 90.62 | 90.62 |
| TraesCS7A01G074700.1 | Wheat | extracellular | 90.62 | 90.62 |
| TraesCS4A01G372600.1 | Wheat | golgi | 90.62 | 90.62 |
| GSMUA_Achr1P16680_001 | Banana | cytosol, extracellular | 85.07 | 84.48 |
| KRH09235 | Soybean | cytosol | 82.64 | 81.51 |
| KRH38733 | Soybean | endoplasmic reticulum | 81.94 | 80.82 |
| VIT_16s0022g01690.t01 | Wine grape | cytosol | 79.86 | 79.58 |
| PGSC0003DMT400070532 | Potato | cytosol | 80.21 | 79.11 |
| PGSC0003DMT400079622 | Potato | cytosol | 79.17 | 78.62 |
| Solyc03g007190.2.1 | Tomato | cytosol, nucleus, plastid | 78.82 | 78.28 |
| AT5G51570.1 | Thale cress | cytosol | 77.78 | 76.71 |
| Bra029166.1-P | Field mustard | cytosol | 76.74 | 75.68 |
| CDY32626 | Canola | cytosol | 76.74 | 75.68 |
| CDY38872 | Canola | cytosol | 76.39 | 75.34 |
| Zm00001d005648_P002 | Maize | cytosol, mitochondrion, plasma membrane | 56.94 | 57.75 |
| Zm00001d050265_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 58.33 | 56.57 |
| Zm00001d044323_P001 | Maize | cytosol | 22.22 | 52.46 |
| Zm00001d039173_P002 | Maize | plastid | 58.33 | 49.27 |
| Os06t0135000-01 | Rice | extracellular | 12.85 | 47.44 |
| Zm00001d028839_P001 | Maize | cytosol | 16.32 | 42.73 |
| Zm00001d003131_P001 | Maize | cytosol | 16.32 | 36.72 |
| Zm00001d003689_P001 | Maize | cytosol | 18.75 | 32.34 |
Protein Annotations
| EntrezGene:100192869 | Gene3D:3.30.479.30 | MapMan:35.1 | ProteinID:AQK80247.1 | UniProt:B6TTQ8 | InterPro:Band_7 |
| InterPro:Band_7/SPFH_dom_sf | EMBL:EU968373 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0009506 | GO:GO:0016020 |
| PFAM:PF01145 | PANTHER:PTHR43327 | PANTHER:PTHR43327:SF11 | SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI000182D818 |
| EnsemblPlantsGene:Zm00001d036073 | EnsemblPlants:Zm00001d036073_P002 | EnsemblPlants:Zm00001d036073_T002 | SEG:seg | : | : |
Description
Hypersensitive-induced reaction protein 4
Coordinates
chr6:-:70605117..70616708
Molecular Weight (calculated)
32077.6 Da
IEP (calculated)
4.938
GRAVY (calculated)
-0.076
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNTFFLFCG CVDQASVAVV EKWGRFLRLA DPGLHFFNPL AGECVAGSLT TRVQSLDVRV ETKTKDNVFV QLICTIQYRV VKENADDAFY ELQNPQQQIQ
101: AYVFDVVRAI VPRMNLDDLF EQKNDVAKAV LEELEKVMAD YGYSIEHILM VDIIPDAAVR KAMNDINAAQ RLQLASVYKG EAEKILMVKK AEAEAEAKYL
201: SGVGIAKQRQ AITDGLRENI LNFSHSVSGT SAKEVMDLIM VTQYFDTIKE LGDGSKNTTI FIPHGPGHVK DISEQIRDGM MQASSSNV
101: AYVFDVVRAI VPRMNLDDLF EQKNDVAKAV LEELEKVMAD YGYSIEHILM VDIIPDAAVR KAMNDINAAQ RLQLASVYKG EAEKILMVKK AEAEAEAKYL
201: SGVGIAKQRQ AITDGLRENI LNFSHSVSGT SAKEVMDLIM VTQYFDTIKE LGDGSKNTTI FIPHGPGHVK DISEQIRDGM MQASSSNV
001: MGNTYCILGG CIEQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRIKSLDVKI ETKTKDNVFV QLVCSIQYRV VKASADDAFY ELQNPKEQIQ
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV
Arabidopsis Description
HIR4Hypersensitive-induced response protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.