Factsheet for Zm00001d039173_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014297_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	Zm00001d014297_P006	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22672	Sorghum	cytosol	82.11	97.56
Os05t0591900-05	Rice	cytosol	78.89	93.4
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	75.95	90.24
TraesCS5A01G212000.1	Wheat	cytosol	75.95	90.24
TraesCS5A01G212100.1	Wheat	cytosol	75.66	89.9
TraesCS5D01G221800.1	Wheat	cytosol	75.37	89.55
TraesCS5B01G211700.1	Wheat	cytosol	75.37	89.55
Bra010119.1-P	Field mustard	cytosol	74.78	88.85
Bra029247.1-P	Field mustard	cytosol	74.78	88.85
KRH03423	Soybean	cytosol	73.31	88.03
PGSC0003DMT400065192	Potato	cytosol	73.02	87.37
AT5G62740.1	Thale cress	cytosol	73.02	87.06
Bra008363.1-P	Field mustard	cytosol	60.7	86.97
Bra010118.1-P	Field mustard	cytosol	73.02	86.76
PGSC0003DMT400083045	Potato	cytosol	72.43	86.67
Solyc03g113220.2.1	Tomato	nucleus	72.43	86.67
KRH56959	Soybean	cytosol, extracellular	72.14	86.62
HORVU5Hr1G062410.6	Barley	cytosol	75.66	85.15
Solyc06g071050.2.1	Tomato	nucleus	71.85	84.78
Zm00001d028839_P001	Maize	cytosol	26.39	81.82
TraesCS5D01G221900.1	Wheat	cytosol	75.95	81.19
Zm00001d005648_P002	Maize	cytosol, mitochondrion, plasma membrane	67.16	80.63
Zm00001d050265_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	70.09	80.47
VIT_17s0000g05680.t01	Wine grape	extracellular	73.9	77.3
GSMUA_Achr6P35910_001	Banana	cytosol	73.31	75.3
Zm00001d003131_P001	Maize	cytosol	27.27	72.66
Zm00001d044323_P001	Maize	cytosol	23.46	65.57
Zm00001d036073_P002	Maize	plasma membrane	49.27	58.33
Zm00001d003689_P001	Maize	cytosol	24.05	49.1
VIT_12s0034g00930.t01	Wine grape	mitochondrion	24.05	39.05
VIT_05s0020g03390.t01	Wine grape	extracellular	5.87	13.89

Protein Annotations

EnsemblPlants:Zm00001d039173_P002	EnsemblPlants:Zm00001d039173_T002	EnsemblPlantsGene:Zm00001d039173	EntrezGene:541821	Gene3D:3.30.479.30	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	ProteinID:AQK88973.1
SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000843E803	UniProt:A0A1D6ME97	MapMan:35.1

Description

hypersensitive induced reaction3 hypersensitive induced reaction3

Coordinates

chr6:+:171777021..171780087

Molecular Weight (calculated)

37047.5 Da

IEP (calculated)

6.170

GRAVY (calculated)

-0.075

Length

341 amino acids

Sequence
(BLAST)

001: MDSCFHVLIQ ALLHCAPSSP PPLPATNCQG LCSGGTASRS DPLTSAMGNL CCCVQVDQST VAIREQFGKF DSVLEPGCHC MPWFAGKRVA GQLTLRLQQL
101: DVRCETKTKL LTPGFVQDNV FVNVVASIQY RALADKASDA FYKLSNTRSQ IQAYVFDVIR ASVPKLHLDD AFEQKDEIAR AVEEELEKAM SAYGFEIVQT
201: LIVDIEPDEH VKRAMNEINA AARLRAAANE KAEAEKIVQI KRAEGEAEAK YLSGLGIARQ RQAIVDGLRD SVLGFSVNVP GTTAKDVMDM VLITQYFDTM
301: KEIGASSKAS SVFIPHGPGA VRDIATQIRD GLLQGSSVAK H

Best Arabidopsis Sequence Match ( AT1G69840.3 )
(BLAST)

001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE

Arabidopsis Description

HIR2Hypersensitive-induced response protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.