Factsheet for HORVU5Hr1G062410.6

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	secretory
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	94.06	99.3
TraesCS5A01G212000.1	Wheat	cytosol	94.06	99.3
TraesCS5A01G212100.1	Wheat	cytosol	93.4	98.61
TraesCS5D01G221800.1	Wheat	cytosol	93.07	98.26
TraesCS5B01G211700.1	Wheat	cytosol	93.07	98.26
Os05t0591900-05	Rice	cytosol	86.47	90.97
KXG22672	Sorghum	cytosol	85.48	90.24
TraesCS5D01G221900.1	Wheat	cytosol	94.06	89.34
Bra029247.1-P	Field mustard	cytosol	82.18	86.76
AT5G62740.1	Thale cress	cytosol	81.85	86.71
Bra010119.1-P	Field mustard	cytosol	81.85	86.41
PGSC0003DMT400083045	Potato	cytosol	81.19	86.32
Bra010118.1-P	Field mustard	cytosol	80.2	84.67
KRH03423	Soybean	cytosol	79.21	84.51
Solyc06g071050.2.1	Tomato	nucleus	79.87	83.74
Bra008363.1-P	Field mustard	cytosol	65.35	83.19
PGSC0003DMT400065192	Potato	cytosol	78.22	83.16
Solyc03g113220.2.1	Tomato	nucleus	77.89	82.81
KRH56959	Soybean	cytosol, extracellular	77.23	82.39
HORVU2Hr1G012690.1	Barley	cytosol	65.02	82.08
HORVU5Hr1G056950.4	Barley	cytosol	74.92	79.65
HORVU4Hr1G082240.6	Barley	cytosol	74.92	78.82
VIT_17s0000g05680.t01	Wine grape	extracellular	82.18	76.38
Zm00001d039173_P002	Maize	plastid	85.15	75.66
GSMUA_Achr6P35910_001	Banana	cytosol	79.54	72.59
HORVU1Hr1G038810.3	Barley	golgi	76.9	69.76
HORVU7Hr1G017190.1	Barley	vacuole	52.15	54.86
VIT_12s0034g00930.t01	Wine grape	mitochondrion	26.73	38.57
VIT_05s0020g03390.t01	Wine grape	extracellular	5.94	12.5

Protein Annotations

EMBL:AK353827	EMBL:AY137513	EnsemblPlants:HORVU5Hr1G062410.6	EnsemblPlantsGene:HORVU5Hr1G062410	Gene3D:3.30.479.30	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	ProteinID:AAN17456.1
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000B4892A8	UniProt:A0A287RH78	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr5H:+:485867580..485869364

Molecular Weight (calculated)

33193.9 Da

IEP (calculated)

5.765

GRAVY (calculated)

-0.059

Length

303 amino acids

Sequence
(BLAST)

001: FSFALPIQVS VQEACSMGNL CCCVQVDQST VAIREQFGKF DSVLQPGCHC LPWIFGKRVV GHLTLRLQQL DVRCETKTKD NVFVTVVASI QYRPLAGKES
101: DAYYKLTNTR SQIQAYVFDV IRASVPKLNL DDAFVQKNDI AKAVEDELEK AMSAYGFEIV QTLIVDIEPD AHVKQAMNEI NAAARMRVAA NEKAEAEKIV
201: QIKRAEGEAE AKYLSGLGIA RQRQAIVDGL RDSVLGFAVN VPGTTAKDVM DMVLITQYFD TMKEIGASSK SSAVFIPHGP GAVRDIATQI RDGLLQGQSA
301: SDN

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.