Factsheet for Solyc03g113220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065192	Potato	cytosol	98.6	98.6
Solyc06g071050.2.1	Tomato	nucleus	91.93	90.66
KRH03423	Soybean	cytosol	90.18	90.49
AT5G62740.1	Thale cress	cytosol	90.53	90.21
Bra029247.1-P	Field mustard	cytosol	89.82	89.2
Bra010119.1-P	Field mustard	cytosol	89.47	88.85
KRH56959	Soybean	cytosol, extracellular	87.72	88.03
Bra008363.1-P	Field mustard	cytosol	72.98	87.39
Os05t0591900-05	Rice	cytosol	87.72	86.81
KXG22672	Sorghum	cytosol	87.02	86.41
Bra010118.1-P	Field mustard	cytosol	86.32	85.71
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	84.91	84.91
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	83.51	82.93
TraesCS5A01G212000.1	Wheat	cytosol	83.51	82.93
Solyc02g067470.2.1	Tomato	endoplasmic reticulum, nucleus	68.42	82.28
TraesCS5A01G212100.1	Wheat	cytosol	82.81	82.23
TraesCS5B01G211700.1	Wheat	cytosol	82.46	81.88
TraesCS5D01G221800.1	Wheat	cytosol	82.46	81.88
VIT_17s0000g05680.t01	Wine grape	extracellular	90.18	78.83
HORVU5Hr1G062410.6	Barley	cytosol	82.81	77.89
Solyc03g058930.2.1	Tomato	cytosol, nucleus	28.77	76.64
TraesCS5D01G221900.1	Wheat	cytosol	83.51	74.61
Solyc01g010770.2.1	Tomato	cytosol	70.53	73.9
GSMUA_Achr6P35910_001	Banana	cytosol	84.91	72.89
Zm00001d039173_P002	Maize	plastid	86.67	72.43
Solyc03g058940.2.1	Tomato	cytosol	18.95	65.06
Solyc03g007190.2.1	Tomato	cytosol, nucleus, plastid	56.84	55.86
VIT_12s0034g00930.t01	Wine grape	mitochondrion	28.77	39.05
VIT_05s0020g03390.t01	Wine grape	extracellular	6.32	12.5

Protein Annotations

EnsemblPlants:Solyc03g113220.2.1	EnsemblPlantsGene:Solyc03g113220.2	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil
PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0002767A3E
UniProt:K4BKH5	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3:-:63433337..63436342

Molecular Weight (calculated)

31350.7 Da

IEP (calculated)

5.725

GRAVY (calculated)

-0.087

Length

285 amino acids

Sequence
(BLAST)

001: MGNLFCCVQV DQSTVAIKEQ FGKYQDVLEP GCHCVPWFLG SQLAGHLSLR VQQLDVRCET KTKDNVFVNV VASIQYRAIA DKANEAFYKL SNTKGQIQAY
101: VFDVIRASVP KLILDDVFEQ KNEIAKAVEE ELEKAMSAYG YEIVQTLIVD IVPDEHVKRA MNEINAAARL RVAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVKEV AQQIRDGLLQ ATVGH

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.