Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- golgi 4
- endoplasmic reticulum 3
- mitochondrion 1
- extracellular 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
27664331
|
msms PMID:
27664331
doi
Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62740.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400083045 | Potato | cytosol | 80.67 | 92.28 |
| Bra029247.1-P | Field mustard | cytosol | 80.67 | 91.64 |
| Bra010119.1-P | Field mustard | cytosol | 80.06 | 90.94 |
| AT5G62740.1 | Thale cress | cytosol | 79.14 | 90.21 |
| Solyc03g113220.2.1 | Tomato | nucleus | 78.83 | 90.18 |
| Solyc06g071050.2.1 | Tomato | nucleus | 79.75 | 89.97 |
| PGSC0003DMT400065192 | Potato | cytosol | 78.22 | 89.47 |
| Os05t0591900-05 | Rice | cytosol | 78.83 | 89.24 |
| Bra008363.1-P | Field mustard | cytosol | 65.03 | 89.08 |
| Bra010118.1-P | Field mustard | cytosol | 77.61 | 88.15 |
| KXG22672 | Sorghum | cytosol | 76.99 | 87.46 |
| TraesCS5A01G212000.1 | Wheat | cytosol | 76.38 | 86.76 |
| TraesCS5B01G211900.1 | Wheat | cytosol, golgi, unclear | 76.38 | 86.76 |
| TraesCS5A01G212100.1 | Wheat | cytosol | 75.77 | 86.06 |
| TraesCS5B01G211700.1 | Wheat | cytosol | 75.46 | 85.71 |
| TraesCS5D01G221800.1 | Wheat | cytosol | 75.46 | 85.71 |
| HORVU5Hr1G062410.6 | Barley | cytosol | 76.38 | 82.18 |
| TraesCS5D01G221900.1 | Wheat | cytosol | 76.38 | 78.06 |
| Zm00001d039173_P002 | Maize | plastid | 77.3 | 73.9 |
| VIT_01s0026g01640.t01 | Wine grape | extracellular | 75.46 | 65.95 |
| VIT_16s0022g01690.t01 | Wine grape | cytosol | 49.39 | 55.71 |
| VIT_12s0034g00930.t01 | Wine grape | mitochondrion | 26.69 | 41.43 |
| VIT_05s0020g03390.t01 | Wine grape | extracellular | 5.83 | 13.19 |
Protein Annotations
| EntrezGene:100245034 | wikigene:100245034 | Gene3D:3.30.479.30 | MapMan:35.1 | InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf |
| ProteinID:CCB43115 | ProteinID:CCB43115.1 | ncoils:Coil | UniProt:F6GTA6 | EMBL:FN594950 | EntrezGene:LOC100245034 |
| wikigene:LOC100245034 | PFAM:PF01145 | PANTHER:PTHR43327 | PANTHER:PTHR43327:SF6 | SMART:SM00244 | SUPFAM:SSF117892 |
| TIGR:TC60164 | UniParc:UPI0002109FF5 | ArrayExpress:VIT_17s0000g05680 | EnsemblPlantsGene:VIT_17s0000g05680 | EnsemblPlants:VIT_17s0000g05680.t01 | unigene:Vvi.7812 |
| RefSeq:XP_002272188 | RefSeq:XP_002272188.1 | RefSeq:XP_002272225 | RefSeq:XP_002272225.1 | RefSeq:XP_002272267 | RefSeq:XP_002272267.1 |
| RefSeq:XP_003634316 | RefSeq:XP_003634316.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr17:+:6162016..6166458
Molecular Weight (calculated)
36222.5 Da
IEP (calculated)
6.313
GRAVY (calculated)
-0.045
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSPTFCLL SISSPFHTAV HRLYCFFFFF IHLIFISAEN MGNLLGCIQV DQSTVAIKER FGKFEEVLEP GCHCLPWCFG SQLAGHLSLR LQQLDVRCET
101: KTKDNVFVNV VASIQYRALA DKANDAFYKL SNTRSQIQAY VFDVIRASVP KLNLDDAFEQ KNEIAKSVED ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA
201: MNEINAAARM RVAANEKAEA EKILQIKRAE GEAESKYLSG LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLVT QYFDTMKEIG AASKSSAVFI
301: PHGPGAVRDV ATQIRDGLLQ STLSHQ
101: KTKDNVFVNV VASIQYRALA DKANDAFYKL SNTRSQIQAY VFDVIRASVP KLNLDDAFEQ KNEIAKSVED ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA
201: MNEINAAARM RVAANEKAEA EKILQIKRAE GEAESKYLSG LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLVT QYFDTMKEIG AASKSSAVFI
301: PHGPGAVRDV ATQIRDGLLQ STLSHQ
001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
Arabidopsis Description
HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.