Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os10t0362300-03 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62740.1 | Os10t0362300-03 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22672 | Sorghum | cytosol | 94.44 | 94.77 |
| TraesCS5A01G212000.1 | Wheat | cytosol | 91.67 | 91.99 |
| TraesCS5B01G211900.1 | Wheat | cytosol, golgi, unclear | 91.67 | 91.99 |
| TraesCS5A01G212100.1 | Wheat | cytosol | 90.97 | 91.29 |
| TraesCS5D01G221800.1 | Wheat | cytosol | 90.62 | 90.94 |
| TraesCS5B01G211700.1 | Wheat | cytosol | 90.62 | 90.94 |
| Bra029247.1-P | Field mustard | cytosol | 89.24 | 89.55 |
| Bra010119.1-P | Field mustard | cytosol | 88.89 | 89.2 |
| KRH03423 | Soybean | cytosol | 87.5 | 88.73 |
| PGSC0003DMT400083045 | Potato | cytosol | 87.5 | 88.42 |
| PGSC0003DMT400065192 | Potato | cytosol | 87.15 | 88.07 |
| Bra008363.1-P | Field mustard | cytosol | 72.57 | 87.82 |
| AT5G62740.1 | Thale cress | cytosol | 87.15 | 87.76 |
| Solyc03g113220.2.1 | Tomato | nucleus | 86.81 | 87.72 |
| Bra010118.1-P | Field mustard | cytosol | 86.81 | 87.11 |
| Solyc06g071050.2.1 | Tomato | nucleus | 86.81 | 86.51 |
| HORVU5Hr1G062410.6 | Barley | cytosol | 90.97 | 86.47 |
| KRH56959 | Soybean | cytosol, extracellular | 85.07 | 86.27 |
| Os08t0398400-01 | Rice | plasma membrane | 84.38 | 85.56 |
| Os09t0361200-01 | Rice | plasma membrane | 82.64 | 82.93 |
| TraesCS5D01G221900.1 | Wheat | cytosol | 91.67 | 82.76 |
| Zm00001d039173_P002 | Maize | plastid | 93.4 | 78.89 |
| VIT_17s0000g05680.t01 | Wine grape | extracellular | 89.24 | 78.83 |
| GSMUA_Achr6P35910_001 | Banana | cytosol | 87.5 | 75.9 |
| Os01t0588400-01 | Rice | plasma membrane | 67.01 | 62.06 |
| Os06t0136000-01 | Rice | plasma membrane | 58.68 | 58.68 |
| Os01t0588100-00 | Rice | cytosol | 56.6 | 51.91 |
| VIT_12s0034g00930.t01 | Wine grape | mitochondrion | 28.47 | 39.05 |
| Os06t0135000-01 | Rice | extracellular | 8.33 | 30.77 |
| VIT_05s0020g03390.t01 | Wine grape | extracellular | 6.6 | 13.19 |
Protein Annotations
| Gene3D:3.30.479.30 | MapMan:35.1 | EntrezGene:4339791 | ProteinID:AAT44297.1 | EMBL:AK072258 | EMBL:AK104358 |
| EMBL:AK104515 | EMBL:AK111545 | EMBL:AK111965 | ProteinID:BAF18406.1 | ProteinID:BAS95629.1 | InterPro:Band_7 |
| InterPro:Band_7/SPFH_dom_sf | ncoils:Coil | ProteinID:EEE64893.1 | EnsemblPlantsGene:Os05g0591900 | EnsemblPlants:Os05t0591900-05 | PFAM:PF01145 |
| PANTHER:PTHR43327 | PANTHER:PTHR43327:SF6 | UniProt:Q6L4S3 | SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI00003A928D |
| RefSeq:XP_015639526.1 | RefSeq:XP_015639527.1 | RefSeq:XP_015639528.1 | : | : | : |
Description
HIRL1Hypothetical gene. (Os05t0591900-01);Non-protein coding transcript. (Os05t0591900-02);Similar to Hypersensitive-induced response protein. (Os05t0591900-03);Similar to Hypersensitive-induced response protein. (Os05t0591900-04);Similar to Hypersensitive-induced response protein. (Os05t0591900-05);Similar to Hypersensitive-induced response protein. (Os05t0591900-06);Similar to Hypersensitive-induced response protein. (Os05t0591900-07)
Coordinates
chr5:-:29486821..29490680
Molecular Weight (calculated)
31622.9 Da
IEP (calculated)
6.367
GRAVY (calculated)
-0.135
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNLFCCVQV DQSTVAIREQ FGKFDAVLEP GCHCLPWFAG KRIAGHLTLR LQQLDVRCET KTKDNVFVNV VASIQYRALA GKANDAFYKL SNTRSQIQAY
101: VFDVIRASVP KLNLDDAFEQ KNDIAKAVED ELEKAMSAYG FEIVQTLIVD IEPDEHVKRA MNEINAAARL RVAANEKAEA EKIVQIKRAE GEAEAKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLIT QYFDTMKEIG ASSKASSVFI PHGPGAVRDI ATQIRDGLLQ GQATTTSH
101: VFDVIRASVP KLNLDDAFEQ KNDIAKAVED ELEKAMSAYG FEIVQTLIVD IEPDEHVKRA MNEINAAARL RVAANEKAEA EKIVQIKRAE GEAEAKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLIT QYFDTMKEIG ASSKASSVFI PHGPGAVRDI ATQIRDGLLQ GQATTTSH
001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
Arabidopsis Description
HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.