Factsheet for TraesCS5B01G211900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G212000.1	Wheat	cytosol	100.0	100.0
TraesCS5B01G211700.1	Wheat	cytosol	98.95	98.95
HORVU5Hr1G062410.6	Barley	cytosol	99.3	94.06
Os05t0591900-05	Rice	cytosol	91.99	91.67
KXG22672	Sorghum	cytosol	90.94	90.94
TraesCS5D01G221900.1	Wheat	cytosol	100.0	89.97
Bra029247.1-P	Field mustard	cytosol	87.46	87.46
Bra010119.1-P	Field mustard	cytosol	87.11	87.11
AT5G62740.1	Thale cress	cytosol	86.41	86.71
PGSC0003DMT400083045	Potato	cytosol	85.71	86.32
Bra010118.1-P	Field mustard	cytosol	85.02	85.02
KRH03423	Soybean	cytosol	83.62	84.51
Bra008363.1-P	Field mustard	cytosol	69.69	84.03
PGSC0003DMT400065192	Potato	cytosol	83.28	83.86
Solyc06g071050.2.1	Tomato	nucleus	84.32	83.74
Solyc03g113220.2.1	Tomato	nucleus	82.93	83.51
KRH56959	Soybean	cytosol, extracellular	81.53	82.39
TraesCS5B01G188800.1	Wheat	cytosol, golgi, unclear	79.79	80.63
TraesCS1B01G164200.1	Wheat	cytosol, extracellular	81.88	80.2
TraesCS4B01G325100.1	Wheat	golgi	79.09	79.93
VIT_17s0000g05680.t01	Wine grape	extracellular	86.76	76.38
Zm00001d039173_P002	Maize	plastid	90.24	75.95
GSMUA_Achr6P35910_001	Banana	cytosol	83.97	72.59
VIT_12s0034g00930.t01	Wine grape	mitochondrion	28.57	39.05
VIT_05s0020g03390.t01	Wine grape	extracellular	6.27	12.5

Protein Annotations

EnsemblPlants:TraesCS5B01G211900.1	EnsemblPlantsGene:TraesCS5B01G211900	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil
PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd03407
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:382595268..382597533

Molecular Weight (calculated)

31502.8 Da

IEP (calculated)

5.765

GRAVY (calculated)

-0.120

Length

287 amino acids

Sequence
(BLAST)

001: MGNLCCCVQV DQSTVAIREQ FGKFDSVLEP GCHCLPWIFG KRVVGHLTLR LQQLDVRCET KTKDNVFVTV VASIQYRPLA GKESDAYYKL TNTRSQIQAY
101: VFDVIRASVP KLNLDDAFVQ KNDIAKAVED ELEKAMSAYG FEIVQTLIVD IEPDAHVKQA MNEINAAARM RVAANEKAEA EKIVQIKRAE GEAEAKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLIT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDI ATQIRDGLLQ GQSASDN

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.