Factsheet for VIT_12s0034g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
golgi 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0057g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g03390.t01	Wine grape	extracellular	43.33	63.19
Bra010118.1-P	Field mustard	cytosol	40.95	29.97
Bra010119.1-P	Field mustard	cytosol	40.95	29.97
Bra029247.1-P	Field mustard	cytosol	40.95	29.97
KRH03423	Soybean	cytosol	40.0	29.58
AT5G62740.1	Thale cress	cytosol	40.0	29.37
PGSC0003DMT400065192	Potato	cytosol	39.52	29.12
PGSC0003DMT400083045	Potato	cytosol	39.52	29.12
KXG22672	Sorghum	cytosol	39.52	28.92
KRH56959	Soybean	cytosol, extracellular	39.05	28.87
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	39.05	28.77
Solyc03g113220.2.1	Tomato	nucleus	39.05	28.77
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	39.05	28.57
TraesCS5A01G212000.1	Wheat	cytosol	39.05	28.57
Os05t0591900-05	Rice	cytosol	39.05	28.47
Solyc06g071050.2.1	Tomato	nucleus	39.05	28.37
TraesCS5A01G212100.1	Wheat	cytosol	38.57	28.22
TraesCS5B01G211700.1	Wheat	cytosol	38.57	28.22
TraesCS5D01G221800.1	Wheat	cytosol	38.57	28.22
HORVU5Hr1G062410.6	Barley	cytosol	38.57	26.73
VIT_17s0000g05680.t01	Wine grape	extracellular	41.43	26.69
TraesCS5D01G221900.1	Wheat	cytosol	39.05	25.71
Zm00001d039173_P002	Maize	plastid	39.05	24.05
VIT_16s0022g01690.t01	Wine grape	cytosol	28.57	20.76
Bra008363.1-P	Field mustard	cytosol	22.86	20.17
VIT_01s0026g01640.t01	Wine grape	extracellular	35.71	20.11

Protein Annotations

MapMan:35.1	ProteinID:CCB48742	ProteinID:CCB48742.1	UniProt:F6H8V6	EMBL:FN595497	GO:GO:0000166
GO:GO:0003674	GO:GO:0003774	GO:GO:0003777	GO:GO:0003779	GO:GO:0003824	GO:GO:0003871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009086	GO:GO:0009987	GO:GO:0016459	GO:GO:0016740	GO:GO:0016787
GO:GO:0032259	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	UniParc:UPI0002109DCE	ArrayExpress:VIT_12s0034g00930	EnsemblPlantsGene:VIT_12s0034g00930
EnsemblPlants:VIT_12s0034g00930.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:16756990..16759234

Molecular Weight (calculated)

22880.8 Da

IEP (calculated)

5.962

GRAVY (calculated)

-0.470

Length

210 amino acids

Sequence
(BLAST)

001: MAFNKSPLSR LKRNLSLQSC FLEVRYSDAF DCKSPDDNAL SHAEGEAESK YLSRLGIARQ RQEIVDGLKD SVLGFSVHVP GTTTNYVTDL VLVTQHFDTT
101: KEIGAVSKSS VVFIPHGPGA VRDVATQESL KRTRSGHAAN SIGVHETGSF RKPLMESMEP ENKTRRRSLS SEEDGDKWAD LLPDSKGFEA ALVAAVPGSA
201: TEIGEKTDLE

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.