Factsheet for VIT_01s0026g01640.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
golgi 5
mitochondrion 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G69840.3	Thale cress	cytosol	67.83	88.46
HORVU2Hr1G012690.1	Barley	cytosol	56.3	87.5
Bra016261.1-P	Field mustard	cytosol	67.02	87.41
CDY11650	Canola	cytosol	67.02	87.41
CDY38764	Canola	cytosol	67.02	87.41
Bra007885.1-P	Field mustard	cytosol	66.22	86.67
CDY56083	Canola	cytosol	66.22	86.67
CDY64507	Canola	cytosol	65.95	86.32
Os08t0398400-01	Rice	plasma membrane	65.42	85.92
PGSC0003DMT400005236	Potato	cytosol	65.15	84.97
TraesCS5A01G497400.1	Wheat	cytosol	64.61	84.86
TraesCS4D01G322000.1	Wheat	cytosol	64.61	84.86
TraesCS4B01G325100.1	Wheat	golgi	64.61	84.86
KRH69355	Soybean	cytosol	64.88	84.62
HORVU4Hr1G082240.6	Barley	cytosol	65.15	84.38
EER96630	Sorghum	cytosol	64.08	84.15
KRG99161	Soybean	cytosol	63.81	83.22
Zm00001d050265_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	65.68	82.49
Zm00001d005648_P002	Maize	cytosol, mitochondrion, plasma membrane	62.73	82.39
TraesCS5D01G195900.1	Wheat	cytosol	62.47	82.04
TraesCS5B01G188800.1	Wheat	cytosol, golgi, unclear	62.47	82.04
TraesCS5A01G193500.1	Wheat	cytosol	62.47	82.04
GSMUA_Achr6P35920_001	Banana	cytosol	62.47	81.75
Os09t0361200-01	Rice	plasma membrane	62.47	81.18
HORVU5Hr1G056950.4	Barley	cytosol	61.66	80.7
KRH74781	Soybean	cytosol	61.66	80.42
KRH69350	Soybean	cytosol	61.93	79.93
KRH69356	Soybean	cytosol	58.98	76.66
VIT_17s0000g05680.t01	Wine grape	extracellular	65.95	75.46
PGSC0003DMT400002232	Potato	cytosol	54.96	75.37
KRH45847	Soybean	cytosol	13.4	69.44
Solyc03g058940.2.1	Tomato	cytosol	14.21	63.86
KXG25127	Sorghum	mitochondrion	67.02	60.53
VIT_16s0022g01690.t01	Wine grape	cytosol	44.5	57.44
KRH69353	Soybean	cytosol	16.62	44.6
VIT_12s0034g00930.t01	Wine grape	mitochondrion	20.11	35.71
VIT_05s0020g03390.t01	Wine grape	extracellular	4.83	12.5

Protein Annotations

EntrezGene:100253479	wikigene:100253479	Gene3D:3.30.479.30	MapMan:35.1	ProteinID:AAO12865	ProteinID:AAO12865.1
EMBL:AY159555	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ProteinID:CBI32018	ProteinID:CBI32018.3	ncoils:Coil
UniProt:D7TNE5	EMBL:FN596002	EntrezGene:LOC100253479	wikigene:LOC100253479	PFAM:PF01145	PANTHER:PTHR43327
PANTHER:PTHR43327:SF13	SMART:SM00244	SUPFAM:SSF117892	TIGR:TC63023	UniParc:UPI0001BE3C05	ArrayExpress:VIT_01s0026g01640
EnsemblPlantsGene:VIT_01s0026g01640	EnsemblPlants:VIT_01s0026g01640.t01	unigene:Vvi.19125	RefSeq:XP_002276517	RefSeq:XP_002276517.1	:

Description

No Description!

Coordinates

chr1:+:10805860..10813796

Molecular Weight (calculated)

41339.1 Da

IEP (calculated)

7.499

GRAVY (calculated)

0.058

Length

373 amino acids

Sequence
(BLAST)

001: MLHLLNIFVI LKNIIFIFNL ERGPNAPYFR SFLALCHSRF QAHKYLIGLS LSPLYITTLS LCSQFSSSPH RSLCIGSGFH RLLRIITMGQ AFCCIQVDQS
101: NVAIKEQFGK FDEVLEPGCH CLPWCFGSQL AGHLSLRVQQ LDVRCETKTK DNVFVTVVAS IQYRALAEKA SDAFYKLSNT RAQIQAYVFD VIRASVPKLD
201: LDSTFEQKNE IAKAVEEELE KAMSAYGFEI VQTLIVDIEP DEHVKRAMNE INAASRMRLA ATEKAEAEKI LQIKRAEGDA ESKYLAGLGI ARQRQAIVDG
301: LRDSVLAFSV NVPGTSSKDV MDMILVTQYF DTLKDIGASS KASSVFIPHG PGAVGDIASQ IRVGLLQAET AKH

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.