Factsheet for Os08t0398400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 17407182
plasma membrane: 17827676
plasma membrane: 18557835
vacuole: 18557835
nucleus: 24133045
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 17407182 doi

F Chen, Y Yuan, Q Li, Z He

National Key laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, The Chinese Academy of Sciences, Shanghai, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 17827676 doi

S Nohzadeh Malakshah, M Habibi Rezaei, M Heidari, GH Salekdeh

Agricultural Biotechnology Research Institute of Iran, Karaj, Iran.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050265_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	96.83	92.59
HORVU2Hr1G012690.1	Barley	cytosol	76.76	90.83
TraesCS4B01G325100.1	Wheat	golgi	90.14	90.14
TraesCS4D01G322000.1	Wheat	cytosol	90.14	90.14
TraesCS5A01G497400.1	Wheat	cytosol	90.14	90.14
Os09t0361200-01	Rice	plasma membrane	90.85	89.9
HORVU4Hr1G082240.6	Barley	cytosol	89.44	88.19
PGSC0003DMT400005236	Potato	cytosol	87.32	86.71
GSMUA_Achr6P35920_001	Banana	cytosol	85.56	85.26
KRH69355	Soybean	cytosol	85.21	84.62
Os05t0591900-05	Rice	cytosol	85.56	84.38
AT1G69840.3	Thale cress	cytosol	84.51	83.92
KRG99161	Soybean	cytosol	83.8	83.22
KRH74781	Soybean	cytosol	80.63	80.07
KRH69356	Soybean	cytosol	80.28	79.44
KRH69350	Soybean	cytosol	80.63	79.24
PGSC0003DMT400002232	Potato	cytosol	70.77	73.9
KRH45847	Soybean	cytosol	17.96	70.83
Solyc03g058940.2.1	Tomato	cytosol	19.72	67.47
KXG25127	Sorghum	mitochondrion	97.54	67.07
VIT_01s0026g01640.t01	Wine grape	extracellular	85.92	65.42
Os01t0588400-01	Rice	plasma membrane	70.77	64.63
Os06t0136000-01	Rice	plasma membrane	60.21	59.38
Os01t0588100-00	Rice	cytosol	57.04	51.59
KRH69353	Soybean	cytosol	22.18	45.32
Bra029004.1-P	Field mustard	cytosol	20.77	41.26
CDY64099	Canola	cytosol, nucleus	25.0	31.28
Os06t0135000-01	Rice	extracellular	8.45	30.77

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.1	EntrezGene:4345499	EMBL:AK065554	ProteinID:BAC99370.1	ProteinID:BAC99432.1
ProteinID:BAF23658.1	ProteinID:BAT05322.1	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil	ProteinID:EEE68638.1
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	EnsemblPlantsGene:Os08g0398400	EnsemblPlants:Os08t0398400-01
PFAM:PF01145	PANTHER:PTHR43327	PANTHER:PTHR43327:SF13	UniProt:Q6ZIV7	SMART:SM00244	SUPFAM:SSF117892
UniParc:UPI00001D8CC1	RefSeq:XP_015649944.1	RefSeq:XP_015649945.1	:	:	:

Description

hypersensitive-induced reaction protein 1Hypersensitive induced reaction protein, Bacterial pathogen resistance (Os08t0398400-01)

Coordinates

chr8:+:19011905..19015935

Molecular Weight (calculated)

31381.6 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.171

Length

284 amino acids

Sequence
(BLAST)

001: MGQALGLVQV DQSTVAIKES FGKFDEVLEP GCHFLPWCIG KQIAGYLSLR VQQLDVRCET KTKDNVFVNV VASVQYRALA EKASDAFYRL SNTREQIQSY
101: VFDVIRASVP KMNLDDAFEQ KNEIAKAVED ELEKAMSMYG YEIVQTLIVD IEPDEHVKRA MNEINAAARL RVAANEKAEA EKILQIKRAE GDAESKYLAG
201: LGIARQRQAI VDGLRDSVLA FSENVPGTSA KDVMDMVLVT QYFDTMKEIG ASSKSSSVFI PHGPGAVKDI AAQIRDGQLQ AKLI

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.