Factsheet for PGSC0003DMT400002232

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 2
mitochondrion 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010770.2.1	Tomato	cytosol	94.85	94.85
PGSC0003DMT400083045	Potato	cytosol	76.1	72.63
Bra007885.1-P	Field mustard	cytosol	75.74	72.28
CDY56083	Canola	cytosol	75.74	72.28
CDY64507	Canola	cytosol	75.37	71.93
PGSC0003DMT400065192	Potato	cytosol	75.37	71.93
Zm00001d005648_P002	Maize	cytosol, mitochondrion, plasma membrane	75.0	71.83
CDY38764	Canola	cytosol	75.37	71.68
Bra016261.1-P	Field mustard	cytosol	75.37	71.68
CDY11650	Canola	cytosol	75.37	71.68
PGSC0003DMT400005236	Potato	cytosol	75.0	71.33
EER96630	Sorghum	cytosol	74.26	71.13
AT1G69840.3	Thale cress	cytosol	74.63	70.98
Os08t0398400-01	Rice	plasma membrane	73.9	70.77
PGSC0003DMT400017866	Potato	cytosol	75.0	70.34
TraesCS4B01G325100.1	Wheat	golgi	72.79	69.72
TraesCS5A01G497400.1	Wheat	cytosol	72.79	69.72
TraesCS4D01G322000.1	Wheat	cytosol	72.79	69.72
HORVU2Hr1G012690.1	Barley	cytosol	61.4	69.58
TraesCS5A01G193500.1	Wheat	cytosol	72.43	69.37
TraesCS5B01G188800.1	Wheat	cytosol, golgi, unclear	72.43	69.37
TraesCS5D01G195900.1	Wheat	cytosol	72.43	69.37
Os09t0361200-01	Rice	plasma membrane	73.16	69.34
HORVU4Hr1G082240.6	Barley	cytosol	73.16	69.1
GSMUA_Achr6P35920_001	Banana	cytosol	72.06	68.77
HORVU5Hr1G056950.4	Barley	cytosol	71.69	68.42
Zm00001d050265_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	74.63	68.35
VIT_01s0026g01640.t01	Wine grape	extracellular	75.37	54.96
PGSC0003DMT400070532	Potato	cytosol	54.04	50.34
PGSC0003DMT400079622	Potato	cytosol	53.31	50.0
KXG25127	Sorghum	mitochondrion	73.9	48.67
Bra029004.1-P	Field mustard	cytosol	16.54	31.47
CDY64099	Canola	cytosol, nucleus	19.85	23.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400002232	EnsemblPlantsGene:PGSC0003DMG400000857	EntrezGene:102603475	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	PGSC:PGSC0003DMG400000857	RefSeq:XP_015159168.1	SMART:SM00244
SUPFAM:SSF117892	UniParc:UPI00029622C5	UniProt:M0ZJT6	MapMan:35.1	:	:

Description

Hypersensitive-induced response protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000857]

Coordinates

chr1:-:13654298..13659893

Molecular Weight (calculated)

30241.1 Da

IEP (calculated)

4.508

GRAVY (calculated)

-0.131

Length

272 amino acids

Sequence
(BLAST)

001: MGQIFGCIQV DQSTVAIKEN FGKYDDVLGP GFHFMPWCFG SQLAGYLSLR VQQLDITCES KTKDNVFVTL VASIQYRALA DKAADAFYKL SNTKEQIQAY
101: VFDVIRATVP TLELDKVFEQ KTEIAKTVGE RLEKVMSLYG YEIVQTLIVD VEPDDQVKSS MNEINAASRL REAAFERAEG EKILQIKQAE GEAESKYLAG
201: LGIARQRQAI VEGLKESVIG FSTSVPGAST KDVMDMILIT QYFDTMKEIG VSSNSSAVFI PHELEDVTSE QR

Best Arabidopsis Sequence Match ( AT1G69840.3 )
(BLAST)

001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE

Arabidopsis Description

HIR2Hypersensitive-induced response protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.