Factsheet for TraesCS1B01G164200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G146000.1	Wheat	cytosol, extracellular	99.66	99.66
OQU91678	Sorghum	cytosol	32.42	90.48
TraesCS1D01G144600.2	Wheat	golgi	99.32	87.13
HORVU1Hr1G038810.3	Barley	golgi	99.32	87.13
PGSC0003DMT400017866	Potato	cytosol	81.57	82.41
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	80.2	81.88
TraesCS5B01G211700.1	Wheat	cytosol	79.18	80.84
CDY49041	Canola	cytosol	77.82	79.72
CDY37535	Canola	cytosol	77.82	79.72
CDX91951	Canola	cytosol	77.82	79.72
CDX74295	Canola	cytosol	77.82	79.72
Bra039130.1-P	Field mustard	cytosol	77.82	79.72
Bra001009.1-P	Field mustard	cytosol	77.82	79.72
Solyc02g067470.2.1	Tomato	endoplasmic reticulum, nucleus	64.16	79.32
TraesCS5B01G188800.1	Wheat	cytosol, golgi, unclear	75.77	78.17
AT3G01290.1	Thale cress	cytosol	75.43	77.54
TraesCS4B01G325100.1	Wheat	golgi	75.09	77.46

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.1	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil	GO:GO:0002239
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773
GO:GO:0005774	GO:GO:0005886	GO:GO:0008150	GO:GO:0009506	GO:GO:0009605	GO:GO:0009607
GO:GO:0016020	PFAM:PF01145	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	SMART:SM00244	SUPFAM:SSF117892
EnsemblPlantsGene:TraesCS1B01G164200	EnsemblPlants:TraesCS1B01G164200.1	TIGR:cd03407	:	:	:

Description

No Description!

Coordinates

chr1B:-:286611454..286612791

Molecular Weight (calculated)

32242.9 Da

IEP (calculated)

7.339

GRAVY (calculated)

-0.155

Length

293 amino acids

Sequence
(BLAST)

001: MGKLVAAIGK LLCCVQVDQS TVAIKERFGK FEDVLDPGCH CVPWIIGSRV SGKLTLRLRQ MDVRCETKTK DNVFVTIVAS IQYRAMEDKA NDAYYKLSNP
101: KSQIQSYVFD VIRASIPKLQ LDDVFEQKND IAKSVEQELE KAMFAYGYEI VQTLIVDIEP DEKVKKAMNE INAAARMRVA ANEKAEAEKI VQIKRAEGEA
201: EAKYLSGLGI ARQRQAIVDG LRDSVLGFSG NVPGTSAKDV MDLVLLTQYF DTMKEIGASS KSSAVFLPHG PGAVADIASQ IRNGFLQSST HNA

Best Arabidopsis Sequence Match ( AT3G01290.1 )
(BLAST)

001: MGNLFCCVLV KQSDVAVKER FGKFQKVLNP GLQFVPWVIG DYVAGTLTLR LQQLDVQCET KTKDNVFVTV VASIQYRVLA DKASDAFYRL SNPTTQIKAY
101: VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID IEPDQQVKRA MNEINAAARM RVAASEKAEA EKIIQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG ATSKSSAVFI PHGPGAVSDV AAQIRNGLLQ ANNAS

Arabidopsis Description

HIR3HIR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.