Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 3
- plastid 2
- cytosol 2
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH09235 | Soybean | cytosol | 98.97 | 98.97 |
| PGSC0003DMT400070532 | Potato | cytosol | 88.36 | 88.36 |
| PGSC0003DMT400079622 | Potato | cytosol | 86.64 | 87.24 |
| Solyc03g007190.2.1 | Tomato | cytosol, nucleus, plastid | 86.3 | 86.9 |
| VIT_16s0022g01690.t01 | Wine grape | cytosol | 85.62 | 86.51 |
| AT5G51570.1 | Thale cress | cytosol | 83.56 | 83.56 |
| Zm00001d036073_P002 | Maize | plasma membrane | 80.82 | 81.94 |
| Bra029166.1-P | Field mustard | cytosol | 81.85 | 81.85 |
| EER89146 | Sorghum | extracellular | 80.48 | 81.6 |
| Os06t0136000-01 | Rice | plasma membrane | 80.48 | 81.6 |
| CDY38872 | Canola | cytosol | 81.51 | 81.51 |
| GSMUA_Achr1P16680_001 | Banana | cytosol, extracellular | 80.82 | 81.38 |
| CDY32626 | Canola | cytosol | 81.16 | 81.16 |
| HORVU7Hr1G017190.1 | Barley | vacuole | 78.42 | 79.51 |
| TraesCS7D01G069900.1 | Wheat | extracellular | 77.74 | 78.82 |
| TraesCS7A01G074700.1 | Wheat | extracellular | 77.74 | 78.82 |
| TraesCS4A01G372600.1 | Wheat | golgi | 77.74 | 78.82 |
| KRH03423 | Soybean | cytosol | 57.19 | 58.8 |
| KRH56959 | Soybean | cytosol, extracellular | 57.19 | 58.8 |
| KRG99161 | Soybean | cytosol | 56.16 | 57.34 |
| KRH18505 | Soybean | endoplasmic reticulum | 55.82 | 56.99 |
| KRG93497 | Soybean | cytosol | 55.48 | 56.64 |
| KRH69355 | Soybean | cytosol | 54.45 | 55.59 |
| KRH69356 | Soybean | cytosol | 54.11 | 55.05 |
| KRH74781 | Soybean | cytosol | 53.77 | 54.9 |
| KRH69350 | Soybean | cytosol | 53.42 | 53.98 |
| Os06t0135000-01 | Rice | extracellular | 11.99 | 44.87 |
| KRH45847 | Soybean | cytosol | 10.62 | 43.06 |
| KRH69353 | Soybean | cytosol | 14.73 | 30.94 |
Protein Annotations
| EMBL:ACUP02005868 | EnsemblPlants:KRH38733 | EnsemblPlantsGene:GLYMA_09G154400 | EntrezGene:100804986 | Gene3D:3.30.479.30 | InterPro:Band_7 |
| InterPro:Band_7/SPFH_dom_sf | PANTHER:PTHR43327 | PANTHER:PTHR43327:SF11 | PFAM:PF01145 | ProteinID:KRH38733 | ProteinID:KRH38733.1 |
| SEG:seg | SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI00023388DE | UniProt:I1L3L1 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr9:-:37729634..37731983
Molecular Weight (calculated)
32656.2 Da
IEP (calculated)
4.892
GRAVY (calculated)
-0.185
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNTFCFFCG CVAQSSVGVV EQWGRFHRLA QPGFHFFNPL AGECLSGILS TRISSLDVRI ETKTKDNVFV QLLCSIQYRV IKENADDAFY ELQNPQEQIQ
101: AYVFDVTRAI VPRMNLDELF EQKGEVAKAV LEELEKVMGE YGYSIEHILM VDIIPDPAVR KAMNEINAAQ RMQLASEYKG EAEKVLLVKK AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSHKVEGT NAKEVMDLIM ITQYFDTIKD LGNSSKNTTV FIPHGPGHVR DIGEQIRNGL MEAASAQVNV EE
101: AYVFDVTRAI VPRMNLDELF EQKGEVAKAV LEELEKVMGE YGYSIEHILM VDIIPDPAVR KAMNEINAAQ RMQLASEYKG EAEKVLLVKK AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSHKVEGT NAKEVMDLIM ITQYFDTIKD LGNSSKNTTV FIPHGPGHVR DIGEQIRNGL MEAASAQVNV EE
001: MGNTYCILGG CIEQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRIKSLDVKI ETKTKDNVFV QLVCSIQYRV VKASADDAFY ELQNPKEQIQ
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV
Arabidopsis Description
HIR4Hypersensitive-induced response protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.