Factsheet for GSMUA_Achr1P16680_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
golgi 3
plastid 1
mitochondrion 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89146	Sorghum	extracellular	84.83	85.42
Zm00001d036073_P002	Maize	plasma membrane	84.48	85.07
Os06t0136000-01	Rice	plasma membrane	84.14	84.72
VIT_16s0022g01690.t01	Wine grape	cytosol	84.14	84.43
TraesCS7D01G069900.1	Wheat	extracellular	82.41	82.99
TraesCS7A01G074700.1	Wheat	extracellular	82.41	82.99
TraesCS4A01G372600.1	Wheat	golgi	82.41	82.99
HORVU7Hr1G017190.1	Barley	vacuole	82.07	82.64
Solyc03g007190.2.1	Tomato	cytosol, nucleus, plastid	81.72	81.72
PGSC0003DMT400079622	Potato	cytosol	81.72	81.72
KRH38733	Soybean	endoplasmic reticulum	81.38	80.82
KRH09235	Soybean	cytosol	81.03	80.48
PGSC0003DMT400070532	Potato	cytosol	81.03	80.48
AT5G51570.1	Thale cress	cytosol	79.66	79.11
CDY32626	Canola	cytosol	77.93	77.4
Bra029166.1-P	Field mustard	cytosol	77.93	77.4
CDY38872	Canola	cytosol	77.59	77.05
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	56.9	57.89
GSMUA_Achr6P35920_001	Banana	cytosol	54.48	55.44
GSMUA_Achr6P35910_001	Banana	cytosol	54.14	47.29
Os06t0135000-01	Rice	extracellular	12.41	46.15
GSMUA_Achr8P26210_001	Banana	cytosol	24.83	26.47

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.1	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005794	GO:GO:0005886
GO:GO:0009506	GO:GO:0016020	EnsemblPlantsGene:GSMUA_Achr1G16680_001	EnsemblPlants:GSMUA_Achr1P16680_001	EnsemblPlants:GSMUA_Achr1T16680_001	UniProt:M0S0H6
PFAM:PF01145	PANTHER:PTHR43327	PANTHER:PTHR43327:SF11	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000296AEA8
SEG:seg	:	:	:	:	:

Description

Hypersensitive-induced response protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr1G16680_001]

Coordinates

chr1:-:12418251..12424816

Molecular Weight (calculated)

32085.5 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.050

Length

290 amino acids

Sequence
(BLAST)

001: MVNTFFVFCA CIDQASIGVV EKWGRFLSLA GPGLHFFNPF AGECLAGVLS TRVSSLDVRV ETKTKDNVFV QLVCSIQYRV VKENADDAFY ELQNPQEQIQ
101: AYVFDVVRAH VPRMTLDELF EQKGDVAKAV LEELEKVMGG YGYNIEQILM VDIIPDASVR RAMNEINAAQ RLQLASVYKG EAEKVLMVKK AEAEAEAKYL
201: SGVGIAKQRQ AITEGLRDNI LNFSNTVSGT SAKEVMDLIM VTQYFDTIKE LGNSSKNTTV FIPHGPGHVR DVTDQIRNGV MEASSNLVGN

Best Arabidopsis Sequence Match ( AT5G51570.1 )
(BLAST)

001: MGNTYCILGG CIEQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRIKSLDVKI ETKTKDNVFV QLVCSIQYRV VKASADDAFY ELQNPKEQIQ
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV

Arabidopsis Description

HIR4Hypersensitive-induced response protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.