Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 3
- cytosol 3
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d044323_P001 | Maize | cytosol | 38.64 | 93.44 |
| Os01t0588400-01 | Rice | plasma membrane | 83.73 | 79.42 |
| EER96630 | Sorghum | cytosol | 67.8 | 70.42 |
| KXG22672 | Sorghum | cytosol | 66.78 | 68.64 |
| OQU91678 | Sorghum | cytosol | 20.0 | 56.19 |
| EER89146 | Sorghum | extracellular | 50.51 | 51.74 |
| KXG25127 | Sorghum | mitochondrion | 69.83 | 49.88 |
Protein Annotations
| EnsemblPlants:EES03186 | EnsemblPlantsGene:SORBI_3003G201600 | EntrezGene:8082456 | Gene3D:3.30.479.30 | InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf |
| ncoils:Coil | PANTHER:PTHR43327 | PANTHER:PTHR43327:SF4 | PFAM:PF01145 | ProteinID:EES03186 | ProteinID:EES03186.1 |
| RefSeq:XP_002458066.1 | SEG:seg | SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI0001A84E3D | UniProt:C5XPG9 |
| MapMan:35.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:53039633..53040945
Molecular Weight (calculated)
32394.8 Da
IEP (calculated)
5.778
GRAVY (calculated)
-0.113
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGSSSSIH SADLPKLLCC ACVEQSTVAM EETCGRYDTV LQPGCHFMPW CVGRRVAGYL SLRVQQLDVR CETKSKDNVF VTVVASVQYR AIADKAYDAF
101: YRLSNAREQI QSYVFDVIRA SVPNMNLDQV FEQKNEVARA VEEELAKAMT MYGYEIVQTL IIDIEPDEVV KRAMNDINAA ARLRVAAAER AEADKIQQVK
201: RAEGEAESKY LAGVGVARQR QAIVEGLRRF VPDEKSVMDM VLATQYFDTI RDIGATSRAA TVFIPHGPAA VHDMAAQVRD GVLQAAAYAP GAGTK
101: YRLSNAREQI QSYVFDVIRA SVPNMNLDQV FEQKNEVARA VEEELAKAMT MYGYEIVQTL IIDIEPDEVV KRAMNDINAA ARLRVAAAER AEADKIQQVK
201: RAEGEAESKY LAGVGVARQR QAIVEGLRRF VPDEKSVMDM VLATQYFDTI RDIGATSRAA TVFIPHGPAA VHDMAAQVRD GVLQAAAYAP GAGTK
001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
Arabidopsis Description
HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.