Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
18260611
plasma membrane: 19502382 plasma membrane: 27800704 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034365_P001 | Maize | plasma membrane | 84.55 | 91.18 |
| EER93336 | Sorghum | cytosol | 83.03 | 89.25 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 83.03 | 85.62 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 82.12 | 85.49 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 83.03 | 85.36 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 64.55 | 77.74 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 69.39 | 73.63 |
| Zm00001d013115_P001 | Maize | cytosol | 32.12 | 72.6 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 55.76 | 72.16 |
| PGSC0003DMT400072325 | Potato | cytosol | 58.18 | 63.58 |
| Solyc10g081850.1.1 | Tomato | cytosol | 57.58 | 62.71 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 61.52 | 62.65 |
| Solyc01g006950.2.1 | Tomato | nucleus | 56.36 | 62.0 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 54.55 | 61.64 |
| PGSC0003DMT400054965 | Potato | cytosol | 55.45 | 61.0 |
| KRH32862 | Soybean | cytosol | 56.06 | 60.46 |
| KRH72168 | Soybean | cytosol | 55.76 | 60.33 |
| KRH72169 | Soybean | cytosol | 59.39 | 58.51 |
| CDY70958 | Canola | cytosol | 58.79 | 58.26 |
| Bra001422.1-P | Field mustard | cytosol | 58.79 | 58.26 |
| CDX73851 | Canola | cytosol | 58.79 | 58.08 |
| CDY01061 | Canola | cytosol, plastid | 58.48 | 57.61 |
| KRH32861 | Soybean | mitochondrion | 57.88 | 57.53 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 60.3 | 57.51 |
| CDY08492 | Canola | cytosol | 58.18 | 56.64 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 55.45 | 56.31 |
| Os02t0209900-01 | Rice | cytosol | 51.21 | 54.34 |
| KRH68016 | Soybean | cytosol | 47.27 | 53.06 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 24.55 | 52.26 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 47.27 | 51.83 |
| AT3G52400.1 | Thale cress | cytosol | 51.82 | 50.15 |
| Bra033436.1-P | Field mustard | cytosol | 51.52 | 49.71 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 46.36 | 49.68 |
| CDY23212 | Canola | cytosol | 51.52 | 49.56 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 49.7 | 49.1 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 49.7 | 48.81 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 43.94 | 46.62 |
| Os07t0528900-00 | Rice | cytosol, extracellular, plasma membrane | 15.15 | 45.05 |
| CDX95336 | Canola | cytosol | 14.24 | 44.76 |
| Os06t0168500-01 | Rice | plasma membrane | 41.21 | 44.59 |
| Os12t0192300-00 | Rice | plasma membrane | 25.45 | 24.14 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | EntrezGene:4334356 | ProteinID:AAT75251.1 | ProteinID:ABF99241.1 |
| EMBL:AK065950 | ProteinID:BAF13408.1 | ProteinID:BAS86738.1 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 | GO:GO:0061025 | InterPro:IPR000727 | EnsemblPlantsGene:Os03g0787000 |
| EnsemblPlants:Os03t0787000-01 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF69 | UniProt:Q6F3B4 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00003E1ACD | RefSeq:XP_015628438.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to Syntaxin. (Os03t0787000-01)
Coordinates
chr3:+:32694811..32696014
Molecular Weight (calculated)
35613.3 Da
IEP (calculated)
7.673
GRAVY (calculated)
-0.341
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNLFSSSWK RTGGGGGGDG DIESGGGVEM APPPGAAAGA SLDRFFEDVE SIKDELRDLE RIQRSLHDAN EGGKSLHDAA AVRALRARMD ADVAAAIKKA
101: KVVKLRLESL DRANAANRSV PGCGPGSSTD RTRTSVVAGL RKKLRDSMES FSSLRARISS EYRETVARRY YTVTGEQPDE ATLDNLAETG EGERFLQRAI
201: AEQGRGEVLG VVAEIQERHG AVAELERSLL ELHQVFNDMA VLVAAQGEQL DDIETHVGRA RSFVDRGREQ LVVARKHQKS TRKWTCIAII ILLVLILVVV
301: LPIVLKFVNN NKSSSSSPAP ATPSPPPPTA
101: KVVKLRLESL DRANAANRSV PGCGPGSSTD RTRTSVVAGL RKKLRDSMES FSSLRARISS EYRETVARRY YTVTGEQPDE ATLDNLAETG EGERFLQRAI
201: AEQGRGEVLG VVAEIQERHG AVAELERSLL ELHQVFNDMA VLVAAQGEQL DDIETHVGRA RSFVDRGREQ LVVARKHQKS TRKWTCIAII ILLVLILVVV
301: LPIVLKFVNN NKSSSSSPAP ATPSPPPPTA
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.