Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23212 | Canola | cytosol | 93.33 | 28.57 |
| CDY51747 | Canola | cytosol | 35.24 | 27.41 |
| CDY21160 | Canola | cytosol | 34.29 | 27.07 |
| CDY50666 | Canola | cytosol | 34.29 | 26.67 |
| AT3G52400.1 | Thale cress | cytosol | 82.86 | 25.51 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 77.14 | 24.11 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 75.24 | 23.65 |
| CDY01061 | Canola | cytosol, plastid | 63.81 | 20.0 |
| CDY70958 | Canola | cytosol | 62.86 | 19.82 |
| CDY08492 | Canola | cytosol | 63.81 | 19.76 |
| CDX73851 | Canola | cytosol | 62.86 | 19.76 |
| KRH72169 | Soybean | cytosol | 56.19 | 17.61 |
| KRH32861 | Soybean | mitochondrion | 55.24 | 17.47 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 42.86 | 16.42 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 50.48 | 16.36 |
| Solyc01g006950.2.1 | Tomato | nucleus | 42.86 | 15.0 |
| PGSC0003DMT400054965 | Potato | cytosol | 42.86 | 15.0 |
| Os03t0787000-01 | Rice | plasma membrane | 44.76 | 14.24 |
| Solyc10g081850.1.1 | Tomato | cytosol | 40.95 | 14.19 |
| PGSC0003DMT400072325 | Potato | cytosol | 40.0 | 13.91 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 40.95 | 13.83 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 32.38 | 13.33 |
| CDY20986 | Canola | cytosol | 36.19 | 12.75 |
| CDY19350 | Canola | cytosol | 36.19 | 12.75 |
| CDX97943 | Canola | cytosol | 36.19 | 12.75 |
| CDY34656 | Canola | cytosol | 36.19 | 12.75 |
| Zm00001d034365_P001 | Maize | plasma membrane | 37.14 | 12.75 |
| CDY70107 | Canola | cytosol | 35.24 | 12.42 |
| CDY34843 | Canola | cytosol | 35.24 | 12.42 |
| EER93336 | Sorghum | cytosol | 36.19 | 12.38 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 34.29 | 12.33 |
| CDY29963 | Canola | cytosol | 35.24 | 11.94 |
| CDY25157 | Canola | cytosol | 22.86 | 11.88 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 35.24 | 11.67 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 34.29 | 11.25 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 34.29 | 11.21 |
| CDY48554 | Canola | cytosol | 30.48 | 10.49 |
| CDY21958 | Canola | cytosol | 30.48 | 10.49 |
| CDY31137 | Canola | cytosol | 28.57 | 9.87 |
| Zm00001d013115_P001 | Maize | cytosol | 13.33 | 9.59 |
| CDX97497 | Canola | cytosol | 26.67 | 9.24 |
| CDX93553 | Canola | cytosol | 26.67 | 9.12 |
| CDX95050 | Canola | cytosol | 26.67 | 9.12 |
| CDY20921 | Canola | cytosol | 22.86 | 8.39 |
| CDY29223 | Canola | cytosol | 22.86 | 8.36 |
| CDY46302 | Canola | cytosol | 22.86 | 8.33 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 0.95 | 0.65 |
| CDY51748 | Canola | cytosol | 0.95 | 0.56 |
| CDY21161 | Canola | cytosol | 0.95 | 0.56 |
| CDY50665 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX95336 | EnsemblPlantsGene:GSBRNA2T00101008001 | Gene3D:1.20.5.110 | GO:A0A078E1T7 | InterPro:IPR000727 | InterPro:T_SNARE_dom |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | PFAM:PF05739 | PFscan:PS50192 | ProteinID:CDX95336 | ProteinID:CDX95336.1 |
| SEG:seg | SUPFAM:SSF58038 | TMHMM:TMhelix | UniParc:UPI0004EDC1F4 | MapMan:22.7.1.1 | : |
Description
BnaC04g28220D
Coordinates
chrLK031888:-:329723..330350
Molecular Weight (calculated)
11574.2 Da
IEP (calculated)
10.842
GRAVY (calculated)
-0.170
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLVEHQGE QLEDIESHVK RANSLVRSGA DKLVKARFYQ KNTRKWTCYA ILLLIIIVVL VVLFTVKPWD NNNGGGGGGS PRQAAPVQAQ PPPPPPPALT
101: RRLLR
101: RRLLR
001: MNDLLSGSFK TSVADGSSPP HSHNIEMSKA KVSGGSCHGG NNLDTFFLDV EVVNEDLKEL DRLCHNLRSS NEQSKTLHNA NAVKELKKKM DADVTAALKT
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
Arabidopsis Description
SYP122Syntaxin-122 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.