Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024476.1-P | Field mustard | cytosol | 97.56 | 97.9 |
| CDY20921 | Canola | cytosol | 95.47 | 95.8 |
| CDY46302 | Canola | cytosol | 87.46 | 87.15 |
| CDY25157 | Canola | cytosol | 60.63 | 86.14 |
| AT2G18260.1 | Thale cress | cytosol | 82.58 | 77.7 |
| VIT_04s0043g00820.t01 | Wine grape | cytosol | 60.28 | 57.86 |
| VIT_04s0023g01980.t01 | Wine grape | cytosol | 59.93 | 57.53 |
| KRH76768 | Soybean | cytosol | 59.23 | 56.86 |
| Solyc02g085090.1.1 | Tomato | cytosol | 58.19 | 55.85 |
| PGSC0003DMT400009282 | Potato | cytosol, mitochondrion | 58.19 | 55.85 |
| KRH28699 | Soybean | cytosol | 58.19 | 55.85 |
| GSMUA_Achr10P... | Banana | cytosol | 42.86 | 45.22 |
| KRH59335 | Soybean | cytosol | 20.91 | 39.47 |
| KRH43180 | Soybean | cytosol | 34.84 | 38.91 |
| CDX95050 | Canola | cytosol | 40.07 | 37.46 |
| CDX93553 | Canola | cytosol | 40.07 | 37.46 |
| CDX97497 | Canola | cytosol | 39.02 | 36.96 |
| CDY31137 | Canola | cytosol | 38.33 | 36.18 |
| CDY34843 | Canola | cytosol | 35.54 | 34.23 |
| CDY34656 | Canola | cytosol | 35.54 | 34.23 |
| CDY20986 | Canola | cytosol | 35.19 | 33.89 |
| CDY48554 | Canola | cytosol | 35.89 | 33.77 |
| CDY70107 | Canola | cytosol | 34.84 | 33.56 |
| CDY21958 | Canola | cytosol | 35.54 | 33.44 |
| CDX97943 | Canola | cytosol | 34.49 | 33.22 |
| CDY19350 | Canola | cytosol | 34.49 | 33.22 |
| CDY70958 | Canola | cytosol | 35.19 | 30.33 |
| CDX73851 | Canola | cytosol | 34.84 | 29.94 |
| CDY01061 | Canola | cytosol, plastid | 34.84 | 29.85 |
| CDY51747 | Canola | cytosol | 13.94 | 29.63 |
| CDY50666 | Canola | cytosol | 13.94 | 29.63 |
| CDY08492 | Canola | cytosol | 34.84 | 29.5 |
| CDY21160 | Canola | cytosol | 13.59 | 29.32 |
| CDY51748 | Canola | cytosol | 17.77 | 28.81 |
| CDY23212 | Canola | cytosol | 34.15 | 28.57 |
| CDY29963 | Canola | cytosol | 30.31 | 28.06 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 32.4 | 27.84 |
| CDY50665 | Canola | cytosol | 16.72 | 27.59 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 32.06 | 27.38 |
| CDY21161 | Canola | cytosol | 16.72 | 26.82 |
| CDX95336 | Canola | cytosol | 8.36 | 22.86 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | GO:A0A078GX87 | UniProt:A0A078GX87 | EnsemblPlants:CDY29223 | ProteinID:CDY29223 |
| ProteinID:CDY29223.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| EnsemblPlantsGene:GSBRNA2T00042148001 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF123 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EF4C40 | SEG:seg |
Description
BnaA06g25340DBnaA06g25340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GX87]
Coordinates
chrLK032233:+:365482..366345
Molecular Weight (calculated)
32471.3 Da
IEP (calculated)
5.795
GRAVY (calculated)
-0.283
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFL SYVELKKQAK IDTESDRDVE KGELNEEALS AFFAEIESIK TLIEEITHLL LELQNLNEET KSTHSAKILR GLRDRMESNI VAVSRKANTA
101: KALIDAVETE NRRSGSCTDR TRVAITNGVR AKLRETMGEF HRLREMIFAD YREDLKRKYF LAIGEEPSDE AMEKMMISGG LVKTFEVKAE MDLEMKERHE
201: AVNEIKRSLN RLHQVFLDMA VLVETQGDGV DDIEANVAVA GSFVSGGTNS LFYANQMKKK NKKWVVWGSV LGVIILLVCL ISMLASR
101: KALIDAVETE NRRSGSCTDR TRVAITNGVR AKLRETMGEF HRLREMIFAD YREDLKRKYF LAIGEEPSDE AMEKMMISGG LVKTFEVKAE MDLEMKERHE
201: AVNEIKRSLN RLHQVFLDMA VLVETQGDGV DDIEANVAVA GSFVSGGTNS LFYANQMKKK NKKWVVWGSV LGVIILLVCL ISMLASR
001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR
Arabidopsis Description
SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.