Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039622.1-P | Field mustard | cytosol | 98.96 | 98.96 |
| CDY25157 | Canola | cytosol | 67.36 | 96.04 |
| CDY29223 | Canola | cytosol | 87.15 | 87.46 |
| CDY20921 | Canola | cytosol | 86.11 | 86.71 |
| AT2G18260.1 | Thale cress | cytosol | 87.15 | 82.3 |
| VIT_04s0043g00820.t01 | Wine grape | cytosol | 61.46 | 59.2 |
| VIT_04s0023g01980.t01 | Wine grape | cytosol | 60.76 | 58.53 |
| KRH28699 | Soybean | cytosol | 60.07 | 57.86 |
| KRH76768 | Soybean | cytosol | 59.72 | 57.53 |
| Solyc02g085090.1.1 | Tomato | cytosol | 58.33 | 56.19 |
| PGSC0003DMT400009282 | Potato | cytosol, mitochondrion | 57.99 | 55.85 |
| GSMUA_Achr10P... | Banana | cytosol | 44.44 | 47.06 |
| KRH59335 | Soybean | cytosol | 22.22 | 42.11 |
| KRH43180 | Soybean | cytosol | 36.11 | 40.47 |
| CDX97497 | Canola | cytosol | 39.93 | 37.95 |
| CDX93553 | Canola | cytosol | 39.93 | 37.46 |
| CDX95050 | Canola | cytosol | 39.93 | 37.46 |
| CDY31137 | Canola | cytosol | 39.24 | 37.17 |
| CDY34843 | Canola | cytosol | 35.76 | 34.56 |
| CDY34656 | Canola | cytosol | 35.76 | 34.56 |
| CDY48554 | Canola | cytosol | 36.46 | 34.43 |
| CDY20986 | Canola | cytosol | 35.42 | 34.23 |
| CDY21958 | Canola | cytosol | 36.11 | 34.1 |
| CDY70107 | Canola | cytosol | 35.07 | 33.89 |
| CDX97943 | Canola | cytosol | 34.72 | 33.56 |
| CDY19350 | Canola | cytosol | 34.72 | 33.56 |
| CDY70958 | Canola | cytosol | 36.11 | 31.23 |
| CDX73851 | Canola | cytosol | 35.76 | 30.84 |
| CDY01061 | Canola | cytosol, plastid | 35.76 | 30.75 |
| CDY08492 | Canola | cytosol | 35.76 | 30.38 |
| CDY51747 | Canola | cytosol | 14.24 | 30.37 |
| CDY21160 | Canola | cytosol | 13.89 | 30.08 |
| CDY51748 | Canola | cytosol | 18.4 | 29.94 |
| CDY23212 | Canola | cytosol | 35.42 | 29.74 |
| CDY29963 | Canola | cytosol | 31.25 | 29.03 |
| CDY50666 | Canola | cytosol | 13.54 | 28.89 |
| CDY50665 | Canola | cytosol | 17.36 | 28.74 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 32.64 | 27.98 |
| CDY21161 | Canola | cytosol | 17.36 | 27.93 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 32.29 | 27.84 |
| CDX95336 | Canola | cytosol | 8.33 | 22.86 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | GO:A0A078I872 | UniProt:A0A078I872 | EnsemblPlants:CDY46302 | ProteinID:CDY46302 |
| ProteinID:CDY46302.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| EnsemblPlantsGene:GSBRNA2T00083695001 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF123 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EEC14A | SEG:seg |
Description
BnaA07g01990DBnaA07g01990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I872]
Coordinates
chrLK032660:-:85490..86381
Molecular Weight (calculated)
32862.5 Da
IEP (calculated)
7.277
GRAVY (calculated)
-0.447
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFL SYVELKKQAK IDTESDHVDV EKGDPHQENL SAFFSEIETI KTLIEEITHL LHDLKNLNEE TKSTHSAKIL RGLRDRMESN IVAISRKANA
101: VKTLIEAIET ENRKSGSCVD RTRVSITNGV RAKLRETMSE FHRLRERIFA EYREDLKRKY FLATGEEPSN EDMEKMISGD GLVKTFEVKP EMDLKTKERH
201: EAVNDIKRSL NRLHQVFLDM AVLVETQGDR VDDIEANVAT AGSFVSGGTN SLFYANQMKK KNKKWVLWGS ILGVIILLVC LVSMLASR
101: VKTLIEAIET ENRKSGSCVD RTRVSITNGV RAKLRETMSE FHRLRERIFA EYREDLKRKY FLATGEEPSN EDMEKMISGD GLVKTFEVKP EMDLKTKERH
201: EAVNDIKRSL NRLHQVFLDM AVLVETQGDR VDDIEANVAT AGSFVSGGTN SLFYANQMKK KNKKWVLWGS ILGVIILLVC LVSMLASR
001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR
Arabidopsis Description
SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.