Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 91.32 | 99.03 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 97.9 | 97.32 |
| CDY23212 | Canola | cytosol | 87.72 | 85.42 |
| AT3G52400.1 | Thale cress | cytosol | 78.74 | 77.13 |
| CDX95336 | Canola | cytosol | 23.65 | 75.24 |
| CDY70958 | Canola | cytosol | 64.97 | 65.17 |
| CDX73851 | Canola | cytosol | 64.97 | 64.97 |
| CDY01061 | Canola | cytosol, plastid | 64.37 | 64.18 |
| CDY08492 | Canola | cytosol | 64.07 | 63.13 |
| KRH32861 | Soybean | mitochondrion | 62.57 | 62.95 |
| PGSC0003DMT400054965 | Potato | cytosol | 55.99 | 62.33 |
| KRH72169 | Soybean | cytosol | 62.28 | 62.09 |
| Solyc01g006950.2.1 | Tomato | nucleus | 55.69 | 62.0 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 58.08 | 59.88 |
| Solyc10g081850.1.1 | Tomato | cytosol | 54.19 | 59.74 |
| PGSC0003DMT400072325 | Potato | cytosol | 53.59 | 59.27 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 45.21 | 55.11 |
| CDY21160 | Canola | cytosol | 21.86 | 54.89 |
| CDY51747 | Canola | cytosol | 21.86 | 54.07 |
| CDY50666 | Canola | cytosol | 21.56 | 53.33 |
| CDY34656 | Canola | cytosol | 47.31 | 53.02 |
| CDY20986 | Canola | cytosol | 47.01 | 52.68 |
| CDY19350 | Canola | cytosol | 46.71 | 52.35 |
| CDY34843 | Canola | cytosol | 46.71 | 52.35 |
| CDX97943 | Canola | cytosol | 46.71 | 52.35 |
| CDY70107 | Canola | cytosol | 46.71 | 52.35 |
| EER93336 | Sorghum | cytosol | 46.11 | 50.16 |
| Zm00001d034365_P001 | Maize | plasma membrane | 45.81 | 50.0 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 46.41 | 49.84 |
| Os03t0787000-01 | Rice | plasma membrane | 49.1 | 49.7 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 47.01 | 49.53 |
| CDY48554 | Canola | cytosol | 44.61 | 48.85 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 46.71 | 48.75 |
| CDY21958 | Canola | cytosol | 44.31 | 48.52 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 46.41 | 48.29 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 33.53 | 43.92 |
| CDY29963 | Canola | cytosol | 40.72 | 43.87 |
| CDY31137 | Canola | cytosol | 35.03 | 38.49 |
| CDX97497 | Canola | cytosol | 34.73 | 38.28 |
| CDX93553 | Canola | cytosol | 34.43 | 37.46 |
| CDX95050 | Canola | cytosol | 34.43 | 37.46 |
| Zm00001d013115_P001 | Maize | cytosol | 15.87 | 36.3 |
| CDY51748 | Canola | cytosol | 19.16 | 36.16 |
| CDY21161 | Canola | cytosol | 19.16 | 35.75 |
| CDY50665 | Canola | cytosol | 18.56 | 35.63 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 31.14 | 35.62 |
| CDY25157 | Canola | cytosol | 20.36 | 33.66 |
| CDY29223 | Canola | cytosol | 27.84 | 32.4 |
| CDY46302 | Canola | cytosol | 27.84 | 32.29 |
| CDY20921 | Canola | cytosol | 27.54 | 32.17 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 12.57 | 27.1 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | GO:A0A078DQ92 | EnsemblPlants:CDX90604 | ProteinID:CDX90604 |
| ProteinID:CDX90604.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00151243001 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0004EDC3EE | SEG:seg | : | : | : | : |
Description
BnaA03g41770D
Coordinates
chrLK031863:+:1080723..1082087
Molecular Weight (calculated)
37790.0 Da
IEP (calculated)
8.781
GRAVY (calculated)
-0.631
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLLSRSFK RSVADDSSPP HSHTIEMPKA KYSGGNNLDK FFLDVEEVNS DLKELDRLCH SLQVSHDKSK TLHNAKAVKE LKDKMDSDVS KALKTAKRVK
101: GNLQALDRSN EVNRSLPECG PGSSSDRQRM AVVNGLRKKL KDAMDHFMRV RETISTDYRD TIHRLYFTVT GENPDEDTVD HLISTGESET FLQKAIQEQG
201: RGRILDTINE IQERHDAVKD IEKSLNELHQ VFLDMAVLVQ SQVEQLDTIE DSLKRTNTII RSGADQLVKA RFYQKNTRKW TCYAVLILII IVVLVVLFTV
301: KPWENNNGGG GGSNRQATPV QAQPPPSQAR RLLR
101: GNLQALDRSN EVNRSLPECG PGSSSDRQRM AVVNGLRKKL KDAMDHFMRV RETISTDYRD TIHRLYFTVT GENPDEDTVD HLISTGESET FLQKAIQEQG
201: RGRILDTINE IQERHDAVKD IEKSLNELHQ VFLDMAVLVQ SQVEQLDTIE DSLKRTNTII RSGADQLVKA RFYQKNTRKW TCYAVLILII IVVLVVLFTV
301: KPWENNNGGG GGSNRQATPV QAQPPPSQAR RLLR
001: MNDLLSGSFK TSVADGSSPP HSHNIEMSKA KVSGGSCHGG NNLDTFFLDV EVVNEDLKEL DRLCHNLRSS NEQSKTLHNA NAVKELKKKM DADVTAALKT
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
Arabidopsis Description
SYP122Syntaxin-122 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.