Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71738 | Canola | nucleus | 98.16 | 98.16 |
| Bra037569.1-P | Field mustard | nucleus | 91.24 | 91.24 |
| CDX92261 | Canola | nucleus | 78.34 | 79.07 |
| CDX99326 | Canola | nucleus | 76.5 | 77.57 |
| CDX75979 | Canola | nucleus | 75.58 | 77.36 |
| CDX82333 | Canola | nucleus | 76.04 | 77.1 |
| AT3G18690.1 | Thale cress | nucleus | 68.66 | 67.12 |
| KRH64076 | Soybean | nucleus | 43.32 | 44.34 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 39.63 | 43.43 |
| KRH53873 | Soybean | nucleus | 43.32 | 42.34 |
| KRH59551 | Soybean | plastid | 40.55 | 42.31 |
| GSMUA_Achr10P... | Banana | nucleus | 37.79 | 40.0 |
| Solyc11g005720.1.1 | Tomato | nucleus | 38.71 | 36.36 |
| PGSC0003DMT400073800 | Potato | nucleus | 38.25 | 36.24 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 37.79 | 35.19 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 35.02 | 35.02 |
| CDY04618 | Canola | nucleus | 35.48 | 33.48 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 36.87 | 33.33 |
| CDY50839 | Canola | nucleus | 35.02 | 33.04 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 36.41 | 32.38 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 36.87 | 31.75 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 35.48 | 31.69 |
| TraesCS7D01G323700.1 | Wheat | peroxisome | 35.02 | 29.92 |
| CDY61066 | Canola | nucleus | 32.26 | 29.91 |
| Os08t0102900-00 | Rice | nucleus | 28.11 | 29.47 |
| TraesCS7A01G326900.1 | Wheat | peroxisome | 34.56 | 29.41 |
| CDY00369 | Canola | nucleus | 31.34 | 29.06 |
| TraesCS7B01G227600.1 | Wheat | peroxisome | 33.18 | 28.24 |
| Zm00001d025374_P001 | Maize | plastid | 33.64 | 27.44 |
| Os02t0539500-01 | Rice | nucleus | 33.64 | 26.55 |
| Zm00001d016748_P001 | Maize | nucleus | 35.02 | 26.48 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 36.41 | 24.01 |
| TraesCS2B01G314600.1 | Wheat | plastid | 36.41 | 24.01 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 36.41 | 24.01 |
| Zm00001d003743_P001 | Maize | nucleus | 34.56 | 23.81 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 35.48 | 23.77 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 20.28 | 22.56 |
| OQU81546 | Sorghum | nucleus | 34.1 | 21.02 |
| EES13183 | Sorghum | nucleus, plastid | 29.95 | 20.63 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 29.49 | 15.38 |
Protein Annotations
| EnsemblPlants:CDY68488 | EnsemblPlantsGene:GSBRNA2T00074805001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF6 | PFAM:PF05678 |
| ProteinID:CDY68488 | ProteinID:CDY68488.1 | SEG:seg | UniParc:UPI0004EC62CE | UniProt:A0A078JLU7 | MapMan:35.1 |
Description
BnaC01g43890DBnaC01g43890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLU7]
Coordinates
chrLK037414:-:4175..5095
Molecular Weight (calculated)
22765.0 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.239
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSESFAGG NPSDQQNQKR QLQICGPRPS PLSVNKDSHK IKKPPKHPAP PPQHRDQAPL YAAREPVVIY AVSPKVVHTT ASDFMNVVQR LTGISSAVFL
101: ESGNGGDVSP AARLAATENA SPRGGKEPVM AAKDETVEIA TAMEEAAELS GYAPGILSPS PAMLPTASAG IFSQMTTHQG GMFSPGLFSP AGLMSPFGFA
201: SLVASPTFAD LFSHIWD
101: ESGNGGDVSP AARLAATENA SPRGGKEPVM AAKDETVEIA TAMEEAAELS GYAPGILSPS PAMLPTASAG IFSQMTTHQG GMFSPGLFSP AGLMSPFGFA
201: SLVASPTFAD LFSHIWD
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.