Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7D01G323700.1 | Wheat | peroxisome | 75.29 | 75.59 |
TraesCS7B01G227600.1 | Wheat | peroxisome | 74.12 | 74.12 |
Os08t0102900-00 | Rice | nucleus | 36.08 | 44.44 |
GSMUA_Achr7P03200_001 | Banana | nucleus | 36.47 | 42.86 |
Zm00001d034979_P001 | Maize | nucleus, plastid | 50.59 | 39.81 |
KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 29.8 | 38.38 |
KRH64076 | Soybean | nucleus | 30.59 | 36.79 |
KRH59551 | Soybean | plastid | 29.41 | 36.06 |
CDX75979 | Canola | nucleus | 29.8 | 35.85 |
AT3G18690.1 | Thale cress | nucleus | 30.59 | 35.14 |
Bra001716.1-P | Field mustard | nucleus | 29.41 | 35.05 |
CDX82333 | Canola | nucleus | 29.41 | 35.05 |
CDX99326 | Canola | nucleus | 29.41 | 35.05 |
Bra037569.1-P | Field mustard | nucleus | 29.8 | 35.02 |
CDX92261 | Canola | nucleus | 29.41 | 34.88 |
Bra022345.1-P | Field mustard | nucleus | 29.41 | 34.72 |
CDY71738 | Canola | nucleus | 29.41 | 34.56 |
CDY68488 | Canola | nucleus | 29.41 | 34.56 |
EES13183 | Sorghum | nucleus, plastid | 42.35 | 34.29 |
PGSC0003DMT400073800 | Potato | nucleus | 30.59 | 34.06 |
KRH53873 | Soybean | nucleus | 29.02 | 33.33 |
Solyc11g005720.1.1 | Tomato | nucleus | 30.2 | 33.33 |
TraesCS5A01G027100.1 | Wheat | nucleus | 29.8 | 30.16 |
TraesCS2A01G298100.1 | Wheat | mitochondrion | 31.37 | 24.32 |
Protein Annotations
EnsemblPlants:TraesCS7A01G326900.1 | EnsemblPlantsGene:TraesCS7A01G326900 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF7 | PFAM:PF05678 |
SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:475165941..475166708
Molecular Weight (calculated)
26445.4 Da
IEP (calculated)
10.498
GRAVY (calculated)
-0.267
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEYSASSSQ RGGGGGRGEL QGPRPAPLRV HKDSHRIKKP PASQVRQPVI IYTVSPKVVH ANPGEFMSVV QRLTGASSSS SSLPPPPQST LPFPFFPQRS
101: SSSMLPPALP QTLPFPFQLQ QASGPQAHEG ALLQHQHSPA ARLAAIEQAS APAARSTGVH RGGLPPLPSI LSPVPGSLPA IPPGFFSPPA GGAGGGINLF
201: GELISPAFHG HGALTGTTAG ASPTPMSLQY FPAAAAPSPS TPYYWDLFNN HPNHL
101: SSSMLPPALP QTLPFPFQLQ QASGPQAHEG ALLQHQHSPA ARLAAIEQAS APAARSTGVH RGGLPPLPSI LSPVPGSLPA IPPGFFSPPA GGAGGGINLF
201: GELISPAFHG HGALTGTTAG ASPTPMSLQY FPAAAAPSPS TPYYWDLFNN HPNHL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.