Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 2
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G034800.1 | Wheat | nucleus | 76.19 | 78.69 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 75.0 | 77.78 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 73.41 | 77.08 |
| Os02t0539500-01 | Rice | nucleus | 57.94 | 53.09 |
| Zm00001d016748_P001 | Maize | nucleus | 55.16 | 48.43 |
| GSMUA_Achr10P... | Banana | nucleus | 35.71 | 43.9 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 37.7 | 40.77 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 31.75 | 40.4 |
| KRH59551 | Soybean | plastid | 32.14 | 38.94 |
| KRH64076 | Soybean | nucleus | 32.54 | 38.68 |
| CDX75979 | Canola | nucleus | 32.14 | 38.21 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 49.6 | 37.99 |
| CDX82333 | Canola | nucleus | 32.14 | 37.85 |
| Bra001716.1-P | Field mustard | nucleus | 32.14 | 37.85 |
| KRH53873 | Soybean | nucleus | 33.33 | 37.84 |
| CDX92261 | Canola | nucleus | 32.14 | 37.67 |
| Bra022345.1-P | Field mustard | nucleus | 32.14 | 37.5 |
| CDX99326 | Canola | nucleus | 31.75 | 37.38 |
| CDY68488 | Canola | nucleus | 31.75 | 36.87 |
| Bra037569.1-P | Field mustard | nucleus | 31.35 | 36.41 |
| CDY71738 | Canola | nucleus | 30.95 | 35.94 |
| AT3G18690.1 | Thale cress | nucleus | 30.95 | 35.14 |
| Solyc11g005720.1.1 | Tomato | nucleus | 28.57 | 31.17 |
| PGSC0003DMT400073800 | Potato | nucleus | 28.17 | 31.0 |
| TraesCS7A01G326900.1 | Wheat | peroxisome | 30.16 | 29.8 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G027100.1 | EnsemblPlantsGene:TraesCS5A01G027100 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF1 | PFAM:PF05678 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:22485164..22486133
Molecular Weight (calculated)
26759.7 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.356
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MDASSSEDRQ SPRSRQLQLQ GPRPPRLSVS KDSHKVRKPP VVPLPYGARQ QAPNHRHQRA QPQPQAQQPR APVIIYDASP KVIHTQPGEF LALVQRLTGP
101: GAPAQYSNST EAAAEPSAVP PQFQPQESLF SPAARYAAIE RSVRPLPPGP APYAGSWLDL DGFAEVLGSG RPGILSPVPS SLPAAASVGL FSPLPFDTGS
201: LSWLNDLSPF LASAGARDAP PFASSPGGLL LATPTVPSPG MMMRFFSDFP DL
101: GAPAQYSNST EAAAEPSAVP PQFQPQESLF SPAARYAAIE RSVRPLPPGP APYAGSWLDL DGFAEVLGSG RPGILSPVPS SLPAAASVGL FSPLPFDTGS
201: LSWLNDLSPF LASAGARDAP PFASSPGGLL LATPTVPSPG MMMRFFSDFP DL
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Arabidopsis Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.