Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 2
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G026300.1 | Wheat | nucleus | 79.92 | 80.25 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 78.69 | 76.19 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 70.9 | 72.08 |
| Os02t0539500-01 | Rice | nucleus | 57.79 | 51.27 |
| Zm00001d016748_P001 | Maize | nucleus | 57.79 | 49.13 |
| GSMUA_Achr10P... | Banana | nucleus | 36.89 | 43.9 |
| KRH59551 | Soybean | plastid | 32.38 | 37.98 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 30.74 | 37.88 |
| KRH53873 | Soybean | nucleus | 34.43 | 37.84 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 35.66 | 37.34 |
| KRH64076 | Soybean | nucleus | 32.38 | 37.26 |
| CDX92261 | Canola | nucleus | 32.79 | 37.21 |
| Bra022345.1-P | Field mustard | nucleus | 32.79 | 37.04 |
| Bra037569.1-P | Field mustard | nucleus | 32.79 | 36.87 |
| CDX99326 | Canola | nucleus | 31.97 | 36.45 |
| CDX82333 | Canola | nucleus | 31.97 | 36.45 |
| Bra001716.1-P | Field mustard | nucleus | 31.97 | 36.45 |
| CDY68488 | Canola | nucleus | 32.38 | 36.41 |
| CDX75979 | Canola | nucleus | 31.15 | 35.85 |
| CDY71738 | Canola | nucleus | 31.56 | 35.48 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 47.54 | 35.26 |
| AT3G18690.1 | Thale cress | nucleus | 30.74 | 33.78 |
| Solyc11g005720.1.1 | Tomato | nucleus | 27.87 | 29.44 |
| PGSC0003DMT400073800 | Potato | nucleus | 27.46 | 29.26 |
| TraesCS7D01G323700.1 | Wheat | peroxisome | 30.33 | 29.13 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G034800.1 | EnsemblPlantsGene:TraesCS5D01G034800 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF1 | PFAM:PF05678 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:34043996..34045414
Molecular Weight (calculated)
25784.6 Da
IEP (calculated)
9.461
GRAVY (calculated)
-0.289
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MDASSSEDRQ SPRSRQLQLQ GPRPPRLSVS KDSHKVRKPP VVPLPYGARQ QAPNNRHQQA QPRAPVIIYD ASPKVIHTQP GEFLALVQRL TGPGAPAQYS
101: AEEAAGSSAM PPQFQPQELP FSPAARYAAI ERSVRPLPPG PAPYAAGSWL DLDGFAEVLG PGRPGILSPV PSALPAAASA GLFSPLPFDT SSLSWLNDLS
201: PFLASAGARD APPFASSPGG LLLATPTVPS PGMMMRFFSD FPDL
101: AEEAAGSSAM PPQFQPQELP FSPAARYAAI ERSVRPLPPG PAPYAAGSWL DLDGFAEVLG PGRPGILSPV PSALPAAASA GLFSPLPFDT SSLSWLNDLS
201: PFLASAGARD APPFASSPGG LLLATPTVPS PGMMMRFFSD FPDL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.