Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 2
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0539500-01 | Rice | nucleus | 59.58 | 62.18 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 49.13 | 57.79 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 48.08 | 56.79 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 48.43 | 55.16 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 45.99 | 55.0 |
| GSMUA_Achr10P... | Banana | nucleus | 34.15 | 47.8 |
| Zm00001d025374_P001 | Maize | plastid | 43.55 | 46.99 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 34.84 | 42.92 |
| Zm00001d003743_P001 | Maize | nucleus | 46.69 | 42.54 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 27.18 | 39.39 |
| KRH53873 | Soybean | nucleus | 29.27 | 37.84 |
| KRH59551 | Soybean | plastid | 27.18 | 37.5 |
| KRH64076 | Soybean | nucleus | 27.53 | 37.26 |
| Bra001716.1-P | Field mustard | nucleus | 26.83 | 35.98 |
| CDX99326 | Canola | nucleus | 26.83 | 35.98 |
| CDX82333 | Canola | nucleus | 26.83 | 35.98 |
| Solyc11g005720.1.1 | Tomato | nucleus | 28.92 | 35.93 |
| CDX75979 | Canola | nucleus | 26.48 | 35.85 |
| CDX92261 | Canola | nucleus | 26.83 | 35.81 |
| PGSC0003DMT400073800 | Potato | nucleus | 28.57 | 35.81 |
| Bra022345.1-P | Field mustard | nucleus | 26.83 | 35.65 |
| CDY68488 | Canola | nucleus | 26.48 | 35.02 |
| CDY71738 | Canola | nucleus | 25.78 | 34.1 |
| Bra037569.1-P | Field mustard | nucleus | 25.78 | 34.1 |
| AT3G18690.1 | Thale cress | nucleus | 25.78 | 33.33 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 27.87 | 24.69 |
Protein Annotations
| EnsemblPlants:Zm00001d016748_P001 | EnsemblPlants:Zm00001d016748_T001 | EnsemblPlantsGene:Zm00001d016748 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF1 |
| PFAM:PF05678 | ProteinID:AQK71589.1 | SEG:seg | UniParc:UPI0002220BC7 | UniProt:A0A1D6HA56 | MapMan:35.2 |
Description
Protein MKS1
Coordinates
chr5:-:174862785..174863648
Molecular Weight (calculated)
30341.8 Da
IEP (calculated)
9.152
GRAVY (calculated)
-0.349
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MDASSGDRSS PRSRQLQGPR PPRLAVSKDS HKVRKPPVAP QRQQHQHQQP AAQLQQQQHQ YHQQQQQQGR QPVIIYDASP KVIHTKPGDF MALVQRLTGP
101: GSTSQAQFDA AAAAAGPSHP AAMEFEPREF LLSPTAALSP AARLAAIERS VRPLPPHHAP AAVPPYFGAT NDDGFFLPGS ADMDSLSAAL GPPAGRPGIL
201: SPAALPPAAS TGLFSPMPFD PSCLSWLSEL SPFLPSAGTR AAAAGLLDQA PFAPSPRSSL LLSTPTMPSP ATFSVLEFFS SPNFPDL
101: GSTSQAQFDA AAAAAGPSHP AAMEFEPREF LLSPTAALSP AARLAAIERS VRPLPPHHAP AAVPPYFGAT NDDGFFLPGS ADMDSLSAAL GPPAGRPGIL
201: SPAALPPAAS TGLFSPMPFD PSCLSWLSEL SPFLPSAGTR AAAAGLLDQA PFAPSPRSSL LLSTPTMPSP ATFSVLEFFS SPNFPDL
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Arabidopsis Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.