Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003743_P001 | Maize | nucleus | 73.68 | 62.22 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 38.72 | 52.82 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 63.16 | 51.06 |
| OQU81546 | Sorghum | nucleus | 67.29 | 50.85 |
| TraesCS2B01G314600.1 | Wheat | plastid | 62.03 | 50.15 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 62.03 | 50.15 |
| Zm00001d016748_P001 | Maize | nucleus | 46.99 | 43.55 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 34.59 | 39.48 |
| GSMUA_Achr10P... | Banana | nucleus | 30.08 | 39.02 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 28.2 | 37.88 |
| KRH64076 | Soybean | nucleus | 29.7 | 37.26 |
| KRH53873 | Soybean | nucleus | 30.83 | 36.94 |
| KRH59551 | Soybean | plastid | 27.44 | 35.1 |
| CDX75979 | Canola | nucleus | 27.82 | 34.91 |
| Bra001716.1-P | Field mustard | nucleus | 27.82 | 34.58 |
| CDX82333 | Canola | nucleus | 27.82 | 34.58 |
| CDX99326 | Canola | nucleus | 27.44 | 34.11 |
| CDX92261 | Canola | nucleus | 27.44 | 33.95 |
| Bra022345.1-P | Field mustard | nucleus | 27.44 | 33.8 |
| CDY68488 | Canola | nucleus | 27.44 | 33.64 |
| Bra037569.1-P | Field mustard | nucleus | 27.07 | 33.18 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 51.88 | 33.17 |
| CDY71738 | Canola | nucleus | 26.69 | 32.72 |
| AT3G18690.1 | Thale cress | nucleus | 27.07 | 32.43 |
| PGSC0003DMT400073800 | Potato | nucleus | 25.94 | 30.13 |
| Solyc11g005720.1.1 | Tomato | nucleus | 25.56 | 29.44 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 29.32 | 24.07 |
Protein Annotations
| EnsemblPlants:Zm00001d025374_P001 | EnsemblPlants:Zm00001d025374_T001 | EnsemblPlantsGene:Zm00001d025374 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF1 |
| PFAM:PF05678 | ProteinID:AQK43624.1 | SEG:seg | UniParc:UPI00084299BE | UniProt:A0A1D6J6S7 | MapMan:35.2 |
Description
VQ motif family protein
Coordinates
chr10:+:116159439..116160239
Molecular Weight (calculated)
26865.0 Da
IEP (calculated)
7.195
GRAVY (calculated)
-0.192
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPPSSSGRP TTPRRQLQGP RPPKLNVRAE SHAIKKHSGS GVPAPGRAPV IIYDASPKVI HVKPSDFMAL VQHLTGPGGS GTPPPPPQQH EGHMVDDDGG
101: GGVPLGQAFL PPELLLSPSA AMSPAARLAT IERSVRPMPA AAPAYGADDG TLAAALGPAR HPGILSPVPS SLPPAAACGL FSPLPFDDPG SISWLNELSP
201: ILRAAASAAN AGASSSGTGP GNGPPPPPPP AYYCDPFVPS PRNLLATPTV PSPATCAEFF GSLPDL
101: GGVPLGQAFL PPELLLSPSA AMSPAARLAT IERSVRPMPA AAPAYGADDG TLAAALGPAR HPGILSPVPS SLPPAAACGL FSPLPFDDPG SISWLNELSP
201: ILRAAASAAN AGASSSGTGP GNGPPPPPPP AYYCDPFVPS PRNLLATPTV PSPATCAEFF GSLPDL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.