Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 97.26 | 97.26 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 90.88 | 90.88 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 45.9 | 77.44 |
| Zm00001d025374_P001 | Maize | plastid | 50.15 | 62.03 |
| Zm00001d003743_P001 | Maize | nucleus | 53.19 | 55.56 |
| OQU81546 | Sorghum | nucleus | 52.58 | 49.15 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 34.35 | 46.5 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 32.52 | 45.92 |
| GSMUA_Achr10P... | Banana | nucleus | 27.05 | 43.41 |
| KRH53873 | Soybean | nucleus | 27.05 | 40.09 |
| KRH64076 | Soybean | nucleus | 25.23 | 39.15 |
| CDX75979 | Canola | nucleus | 24.62 | 38.21 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 22.8 | 37.88 |
| CDX82333 | Canola | nucleus | 24.62 | 37.85 |
| Bra001716.1-P | Field mustard | nucleus | 24.62 | 37.85 |
| KRH59551 | Soybean | plastid | 23.71 | 37.5 |
| CDX99326 | Canola | nucleus | 24.01 | 36.92 |
| CDX92261 | Canola | nucleus | 24.01 | 36.74 |
| Bra022345.1-P | Field mustard | nucleus | 24.01 | 36.57 |
| CDY68488 | Canola | nucleus | 24.01 | 36.41 |
| Bra037569.1-P | Field mustard | nucleus | 24.01 | 36.41 |
| AT3G18690.1 | Thale cress | nucleus | 24.01 | 35.59 |
| CDY71738 | Canola | nucleus | 23.4 | 35.48 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 44.68 | 35.34 |
| PGSC0003DMT400073800 | Potato | nucleus | 20.67 | 29.69 |
| Solyc11g005720.1.1 | Tomato | nucleus | 20.67 | 29.44 |
| TraesCS7B01G227600.1 | Wheat | peroxisome | 22.49 | 29.02 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G314600.1 | EnsemblPlantsGene:TraesCS2B01G314600 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF1 | PFAM:PF05678 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:449669843..449671002
Molecular Weight (calculated)
34761.3 Da
IEP (calculated)
10.357
GRAVY (calculated)
-0.451
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MWNRPHPVSH SRPGALSPLL RVLSRAVAGP PLPSEHDRIR VAALPRMDAT SPSGRPTTPR RQLQLQGPRP PRLSVRPESH AIKKPSGAPP QAQGQGHARR
101: EEKQQGQPPR EPVIIYDASP KIIHTKPSEF MALVQRLTGP GSGALPSEAQ TQDYQMDEAA PGQSFLPPEL LLSPSAAMSP AARLATIERS VRPMPAPTPD
201: YVDFNNYRFD DGGLAAVLGA GRPGPGILSP LPSSLPPAAA SVLFSPLPFD PNGLSWLNEL SPILRAASTG AASSGSGSGG GGSSNGGAYR QPQTYYSDPF
301: VPSPRNLLAT PTVPSPRTFA ELMSNLPDL
101: EEKQQGQPPR EPVIIYDASP KIIHTKPSEF MALVQRLTGP GSGALPSEAQ TQDYQMDEAA PGQSFLPPEL LLSPSAAMSP AARLATIERS VRPMPAPTPD
201: YVDFNNYRFD DGGLAAVLGA GRPGPGILSP LPSSLPPAAA SVLFSPLPFD PNGLSWLNEL SPILRAASTG AASSGSGSGG GGSSNGGAYR QPQTYYSDPF
301: VPSPRNLLAT PTVPSPRTFA ELMSNLPDL
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Arabidopsis Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.