Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025374_P001 | Maize | plastid | 62.22 | 73.68 |
| OQU81546 | Sorghum | nucleus | 65.71 | 58.81 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 33.97 | 54.87 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 56.51 | 54.1 |
| TraesCS2B01G314600.1 | Wheat | plastid | 55.56 | 53.19 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 55.24 | 52.89 |
| Zm00001d016748_P001 | Maize | nucleus | 42.54 | 46.69 |
| GSMUA_Achr10P... | Banana | nucleus | 27.3 | 41.95 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 30.79 | 41.63 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 24.13 | 38.38 |
| KRH64076 | Soybean | nucleus | 25.71 | 38.21 |
| CDX99326 | Canola | nucleus | 25.71 | 37.85 |
| KRH53873 | Soybean | nucleus | 26.67 | 37.84 |
| CDX92261 | Canola | nucleus | 25.71 | 37.67 |
| Bra001716.1-P | Field mustard | nucleus | 25.4 | 37.38 |
| CDX82333 | Canola | nucleus | 25.4 | 37.38 |
| Bra022345.1-P | Field mustard | nucleus | 25.4 | 37.04 |
| CDX75979 | Canola | nucleus | 24.76 | 36.79 |
| KRH59551 | Soybean | plastid | 23.49 | 35.58 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 46.98 | 35.58 |
| AT3G18690.1 | Thale cress | nucleus | 24.76 | 35.14 |
| Bra037569.1-P | Field mustard | nucleus | 24.13 | 35.02 |
| CDY68488 | Canola | nucleus | 23.81 | 34.56 |
| CDY71738 | Canola | nucleus | 23.17 | 33.64 |
| PGSC0003DMT400073800 | Potato | nucleus | 22.22 | 30.57 |
| Solyc11g005720.1.1 | Tomato | nucleus | 22.22 | 30.3 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 25.08 | 24.38 |
Protein Annotations
| EnsemblPlants:Zm00001d003743_P001 | EnsemblPlants:Zm00001d003743_T001 | EnsemblPlantsGene:Zm00001d003743 | EntrezGene:100281832 | InterPro:VQ | PANTHER:PTHR33143 |
| PANTHER:PTHR33143:SF1 | PFAM:PF05678 | ProteinID:ONM17656.1 | SEG:seg | UniParc:UPI000221ED18 | UniProt:A0A1D6EBD8 |
| MapMan:35.2 | : | : | : | : | : |
Description
VQ motif family protein
Coordinates
chr2:-:57065505..57066452
Molecular Weight (calculated)
32683.6 Da
IEP (calculated)
9.913
GRAVY (calculated)
-0.385
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNHSHSRPD SRSPFLHHGH VHAHAAAADT EHLHRAQGPM DPPSSSGRPT TPRRQLQGPR PPRLNVRMES HAIKKPSASG APPAPGQGRP RDHHHHHPQP
101: GRAPVIIYDA SPKVIHAKPS EFMALVQRLT GPGAQAQHER HVADDDATAN GGGVLGQAFL PPELLLSPSA AMSPAARLAT IERSVRPVPA PAPAPDYAAD
201: GTLAAVLGPA RHPGILSPLP SSLPPAAASG LFSPLPFDPS SVSWLNELSP ILRAASTASV GAAGPGATAN GGSRQPPPPA YYSDPFVPSP RNLLATPTVP
301: SPATCAEFFG SLPDL
101: GRAPVIIYDA SPKVIHAKPS EFMALVQRLT GPGAQAQHER HVADDDATAN GGGVLGQAFL PPELLLSPSA AMSPAARLAT IERSVRPVPA PAPAPDYAAD
201: GTLAAVLGPA RHPGILSPLP SSLPPAAASG LFSPLPFDPS SVSWLNELSP ILRAASTASV GAAGPGATAN GGSRQPPPPA YYSDPFVPSP RNLLATPTVP
301: SPATCAEFFG SLPDL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.