Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 56.22 | 63.9 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 45.49 | 48.85 |
| KRH59551 | Soybean | plastid | 37.34 | 41.83 |
| KRH64076 | Soybean | nucleus | 36.48 | 40.09 |
| KRH53873 | Soybean | nucleus | 37.77 | 39.64 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 33.05 | 38.89 |
| Bra037569.1-P | Field mustard | nucleus | 36.05 | 38.71 |
| AT3G18690.1 | Thale cress | nucleus | 36.48 | 38.29 |
| CDY68488 | Canola | nucleus | 35.19 | 37.79 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 40.77 | 37.7 |
| Bra001716.1-P | Field mustard | nucleus | 34.33 | 37.38 |
| CDX82333 | Canola | nucleus | 34.33 | 37.38 |
| CDY71738 | Canola | nucleus | 34.76 | 37.33 |
| CDX99326 | Canola | nucleus | 33.91 | 36.92 |
| CDX75979 | Canola | nucleus | 33.48 | 36.79 |
| CDX92261 | Canola | nucleus | 33.91 | 36.74 |
| Bra022345.1-P | Field mustard | nucleus | 33.91 | 36.57 |
| PGSC0003DMT400073800 | Potato | nucleus | 35.62 | 36.24 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 37.77 | 36.21 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 36.91 | 35.83 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 37.34 | 35.66 |
| Solyc11g005720.1.1 | Tomato | nucleus | 34.76 | 35.06 |
| Zm00001d016748_P001 | Maize | nucleus | 42.92 | 34.84 |
| Zm00001d025374_P001 | Maize | plastid | 39.48 | 34.59 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 28.76 | 34.36 |
| Os02t0539500-01 | Rice | nucleus | 40.34 | 34.18 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 46.35 | 32.83 |
| TraesCS2B01G314600.1 | Wheat | plastid | 45.92 | 32.52 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 44.21 | 31.31 |
| Zm00001d003743_P001 | Maize | nucleus | 41.63 | 30.79 |
| OQU81546 | Sorghum | nucleus | 42.06 | 27.84 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 37.77 | 21.15 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P13020_001 | EnsemblPlants:GSMUA_Achr6T13020_001 | EnsemblPlantsGene:GSMUA_Achr6G13020_001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 |
| PFAM:PF05678 | SEG:seg | UniParc:UPI00029504EC | UniProt:M0T6K0 | MapMan:35.2 | : |
Description
VQ domain containing protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr6G13020_001]
Coordinates
chr6:+:8733188..8733889
Molecular Weight (calculated)
24825.4 Da
IEP (calculated)
6.689
GRAVY (calculated)
-0.375
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSEPRPSP RRELQGPRPA PLRVSRESRK IKKPPVAPPP HHQYPPEPQP QHDRDPVVIY TVSPKIIHAN PSEFMSLVQR LTGPGSDPSA EPSLPSPGGA
101: LSPAARIATF EKAASPHASD LYRARTGAVG GFEIEGEATV DRPASFPGVL SPVPASLLPI SPTLFSPSFD PSVLGFLLEL SPVLANKSNV DGNNRSFMDG
201: GSFLASPSNN LLSTPTVPSP GAFWELLNQF PDL
101: LSPAARIATF EKAASPHASD LYRARTGAVG GFEIEGEATV DRPASFPGVL SPVPASLLPI SPTLFSPSFD PSVLGFLLEL SPVLANKSNV DGNNRSFMDG
201: GSFLASPSNN LLSTPTVPSP GAFWELLNQF PDL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.